PROTMAP2D specifications

Information


Unique identifier OMICS_22509
Name PROTMAP2D
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A 3D model or a calculated 2D map.
Output format BITMAP,ASCII,PHYLIP,CLANS,XLS,CASP,EVA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Version 1.2.2
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Janusz Bujnicki

Publication for PROTMAP2D

PROTMAP2D citation

library_books

NAPS: Network Analysis of Protein Structures

2016
Nucleic Acids Res
PMCID: 4987928
PMID: 27151201
DOI: 10.1093/nar/gkw383

[…] MA (http://ligin.weizmann.ac.il/cma/) allows structural comparison of proteins by analysing the contact maps, and CMA also supports analysis of protein complexes. Standalone programs such as SeqX (), Protmap2D () and CMview () allow construction and basic analysis of contact maps. RING provides several methods for the construction of residue interaction network, which can be analysed using Cytosca […]

PROTMAP2D institution(s)
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Warsaw, Poland
PROTMAP2D funding source(s)
Supported by the Polish Ministry of Science (grant PBZ–KBN–088/PO4/2003) and by the NIH (Fogarty International Center grant R03 TW007163-01).

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