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Information


Unique identifier OMICS_18314
Name protocols.io
Community driven Yes
Data access File download, Browse
User data submission Allowed
Maintained Yes

Maintainers


  • person_outline Bonnie Hurwitz
  • person_outline Leonid Teytelman

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Publication for protocols.io

protocols.io citations

 (25)
call_split

Genetic profiling of Mycobacterium bovis strains from slaughtered cattle in Eritrea

2018
PLoS Negl Trop Dis
PMCID: 5922621
PMID: 29664901
DOI: 10.1371/journal.pntd.0006406
call_split See protocol

[…] To obtain the whole genome sequences, DNA of the 14 Eritrea M. bovis isolates was extracted (dx.doi.org/10.17504/protocols.io.nsgdebw) and sequenced on a MiSeq instrument (Illumina, San Diego, CA) using 2x250 paired-end chemistry and the Nextera XT library preparation kit (Illumina, San Diego, CA). FASTQ files f […]

call_split

Identifying the assembly intermediate in which Gag first associates with unspliced HIV 1 RNA suggests a novel model for HIV 1 RNA packaging

2018
PLoS Pathog
PMCID: 5940231
PMID: 29664940
DOI: 10.1371/journal.ppat.1006977
call_split See protocol

[…] ignal, with error bars representing the SEM, and p values calculated with n = 5 fields using the Student's t-test (two-tailed).Protocol for PLA with concurrent IF is available at: dx.doi.org/10.17504/protocols.io.k7yczpw […]

call_split

Spatial variations of soil respiration and temperature sensitivity along a steep slope of the semiarid Loess Plateau

2018
PLoS One
PMCID: 5889173
PMID: 29624600
DOI: 10.1371/journal.pone.0195400
call_split See protocol

[…] alysis was performed using SPSS 20.0 software (SPSS Inc., Chicago, USA). The figures were generated using Sigmaplot 12.5 software (Systat Software Inc., San Jose, CA, USA) (http://dx.doi.org/10.17504/protocols.io.nrzdd76). […]

library_books

Comparison of secretory signal peptides for heterologous protein expression in microalgae: Expanding the secretion portfolio for Chlamydomonas reinhardtii

2018
PLoS One
PMCID: 5800701
PMID: 29408937
DOI: 10.1371/journal.pone.0192433

[…] ch channel in the z-axis. Then, images were stacked using the Fiji software Z projects function, generating the final images. Raw czi files are deposit at Zenodo (DOI 10.5281/zenodo.600682). 10.17504/protocols.io.kfrctm6 […]

library_books

Species richness of Eurasian Zephyrus hairstreaks (Lepidoptera: Lycaenidae: Theclini) with implications on historical biogeography: An NDM/VNDM approach

2018
PLoS One
PMCID: 5774756
PMID: 29351314
DOI: 10.1371/journal.pone.0191049

[…] d to identify areas of endemism and executed by NDM, because EA has been recognized as a best method that supported areas of endemism []. Analytical procedures are filed in http://dx.doi.org/10.17504/protocols.io.[dx.doi.org/10.17504/protocols.io.jr2cm8e].AoEs were constructed from 2.0°×2.0° and 3.0°×3.0° cell sizes at each taxonomic level (genus and species). The two sizes of cells were optimized […]

library_books

The reconstruction of 2,631 draft metagenome assembled genomes from the global oceans

2018
Sci Data
PMCID: 5769542
PMID: 29337314
DOI: 10.1038/sdata.2017.203

[…] An example of the methodology used to assemble the Tara Oceans metagenomes is available on Protocols.io (https://dx.doi.org/10.17504/protocols.io.hfqb3mw). All metagenomic sequences generated for 234 samples collected from 61 stations during the Tara Oceans expedition were accessed from the […]

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protocols.io institution(s)
Protocols.io, Berkeley, CA, USA; Department of Agricultural and Biosystems Engineering, University of Arizona, Tucson, AZ, USA
protocols.io funding source(s)
Supported by Gordon Betty Moore Foundation GBMF4733.

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