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Protocols specifications


Unique identifier OMICS_18314
Community driven Yes
Data access File download, Browse
User data submission Allowed
Maintained Yes


  • person_outline Bonnie Hurwitz
  • person_outline Leonid Teytelman

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Publication for citations


Genetic profiling of Mycobacterium bovis strains from slaughtered cattle in Eritrea

PLoS Negl Trop Dis
PMCID: 5922621
PMID: 29664901
DOI: 10.1371/journal.pntd.0006406
call_split See protocol

[…] To obtain the whole genome sequences, DNA of the 14 Eritrea M. bovis isolates was extracted ( and sequenced on a MiSeq instrument (Illumina, San Diego, CA) using 2x250 paired-end chemistry and the Nextera XT library preparation kit (Illumina, San Diego, CA). FASTQ files f […]


Identifying the assembly intermediate in which Gag first associates with unspliced HIV 1 RNA suggests a novel model for HIV 1 RNA packaging

PLoS Pathog
PMCID: 5940231
PMID: 29664940
DOI: 10.1371/journal.ppat.1006977
call_split See protocol

[…] ignal, with error bars representing the SEM, and p values calculated with n = 5 fields using the Student's t-test (two-tailed).Protocol for PLA with concurrent IF is available at: […]


Spatial variations of soil respiration and temperature sensitivity along a steep slope of the semiarid Loess Plateau

PLoS One
PMCID: 5889173
PMID: 29624600
DOI: 10.1371/journal.pone.0195400
call_split See protocol

[…] alysis was performed using SPSS 20.0 software (SPSS Inc., Chicago, USA). The figures were generated using Sigmaplot 12.5 software (Systat Software Inc., San Jose, CA, USA) ( […]


Comparison of secretory signal peptides for heterologous protein expression in microalgae: Expanding the secretion portfolio for Chlamydomonas reinhardtii

PLoS One
PMCID: 5800701
PMID: 29408937
DOI: 10.1371/journal.pone.0192433

[…] ch channel in the z-axis. Then, images were stacked using the Fiji software Z projects function, generating the final images. Raw czi files are deposit at Zenodo (DOI 10.5281/zenodo.600682). 10.17504/ […]


Species richness of Eurasian Zephyrus hairstreaks (Lepidoptera: Lycaenidae: Theclini) with implications on historical biogeography: An NDM/VNDM approach

PLoS One
PMCID: 5774756
PMID: 29351314
DOI: 10.1371/journal.pone.0191049

[…] d to identify areas of endemism and executed by NDM, because EA has been recognized as a best method that supported areas of endemism []. Analytical procedures are filed in[].AoEs were constructed from 2.0°×2.0° and 3.0°×3.0° cell sizes at each taxonomic level (genus and species). The two sizes of cells were optimized […]


The reconstruction of 2,631 draft metagenome assembled genomes from the global oceans

Sci Data
PMCID: 5769542
PMID: 29337314
DOI: 10.1038/sdata.2017.203

[…] An example of the methodology used to assemble the Tara Oceans metagenomes is available on ( All metagenomic sequences generated for 234 samples collected from 61 stations during the Tara Oceans expedition were accessed from the […]


Looking to check out a full list of citations? institution(s), Berkeley, CA, USA; Department of Agricultural and Biosystems Engineering, University of Arizona, Tucson, AZ, USA funding source(s)
Supported by Gordon Betty Moore Foundation GBMF4733. reviews

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