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ProtozoaDB specifications

Information


Unique identifier OMICS_03165
Name ProtozoaDB
Alternative name Protozoa DataBase
Restrictions to use None
Maintained No

Publication for Protozoa DataBase

ProtozoaDB citations

 (3)
library_books

Effect of Dietary Forage to Concentrate Ratios on Dynamic Profile Changes and Interactions of Ruminal Microbiota and Metabolites in Holstein Heifers

2017
Front Microbiol
PMCID: 5684179
PMID: 29170660
DOI: 10.3389/fmicb.2017.02206

[…] specific libraries (bacteria, protozoa, fungi, and archaea) was designated as the “representative sequence” and aligned against the SILVA bacterial database (version 119) (Pruesse et al., ), NCBI-nt protozoa database (Koetschan et al., ), Unite fungi ITS database (version 7.0) (Koljalg et al., ), and SILVA archaea database using PYNAST (Caporaso et al., ), respectively, with the default parameter […]

library_books

ProtozoaDB 2.0: A Trypanosoma Brucei Case Study

2017
PMCID: 5617989
PMID: 28726736
DOI: 10.3390/pathogens6030032

[…] The previous version of ProtozoaDB contained only five pathogenic protozoa and some basic analyses. ProtozoaDB 2.0 increased over 17 protozoan species, totalizing 22 genomes and proteomes. New analyses were added in this new […]

library_books

Improved orthologous databases to ease protozoan targets inference

2015
PMCID: 4587786
PMID: 26416523
DOI: 10.1186/s13071-015-1090-0

[…] hand, OrthoMCLDB performed poorly in coverage aspect, with only 0.06 % OGs in its core (760/124,740), while our methodology covered 2.26 % OGs (627/27,701), with our largest n-OD (“KO + EggNOG KOG + ProtozoaDB”). This may be due to the fact that the studied species are not so closely related. In addition, OrthoMCLDB uses a Blast-based algorithm, in a less sensitive approach than our methodology ( […]

Citations

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ProtozoaDB institution(s)
Oswaldo Cruz Institute, FIOCRUZ, CCB, Federal University of Santa Catarina (UFSC), ACBS/UNOESC/SC, COPPE, Federal University of Rio de Janeiro, Brazil

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