Tool stats & trends
Looking to identify usage trends or leading experts?
|Alternative name||Protozoa DataBase|
|Restrictions to use||None|
Publication for Protozoa DataBase
Effect of Dietary Forage to Concentrate Ratios on Dynamic Profile Changes and Interactions of Ruminal Microbiota and Metabolites in Holstein Heifers
[…] specific libraries (bacteria, protozoa, fungi, and archaea) was designated as the “representative sequence” and aligned against the SILVA bacterial database (version 119) (Pruesse et al., ), NCBI-nt protozoa database (Koetschan et al., ), Unite fungi ITS database (version 7.0) (Koljalg et al., ), and SILVA archaea database using PYNAST (Caporaso et al., ), respectively, with the default parameter […]
ProtozoaDB 2.0: A Trypanosoma Brucei Case Study
[…] The previous version of ProtozoaDB contained only five pathogenic protozoa and some basic analyses. ProtozoaDB 2.0 increased over 17 protozoan species, totalizing 22 genomes and proteomes. New analyses were added in this new […]
Improved orthologous databases to ease protozoan targets inference
[…] hand, OrthoMCLDB performed poorly in coverage aspect, with only 0.06 % OGs in its core (760/124,740), while our methodology covered 2.26 % OGs (627/27,701), with our largest n-OD (“KO + EggNOG KOG + ProtozoaDB”). This may be due to the fact that the studied species are not so closely related. In addition, OrthoMCLDB uses a Blast-based algorithm, in a less sensitive approach than our methodology ( […]
Looking to check out a full list of citations?
Be the first to review ProtozoaDB