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ProtPhylo specifications


Unique identifier OMICS_08356
Name ProtPhylo
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


Publication for ProtPhylo

ProtPhylo citations


Metabolic Pathway Assignment of Plant Genes based on Phylogenetic Profiling–A Feasibility Study

Front Plant Sci
PMCID: 5664361
PMID: 29163570
DOI: 10.3389/fpls.2017.01831

[…] trics for the measurement of profile similarity (Vert, ), as well as by estimating the required number of species for successful phylogenetic profiling applications (Škunca and Dessimoz, ). Recently, ProtPhylo, a convenient web-based services for the search for proteins that are possibly associated with a reference protein according to phylogenetic profiling has been developed (Cheng and Perocchi, […]


PrePhyloPro: phylogenetic profile based prediction of whole proteome linkages

PMCID: 5578374
PMID: 28875072
DOI: 10.7717/peerj.3712

[…] put proteins by using centrality measurements (degree and betweenness).Several online tools exist for phylogenetic profiling, for example STRING (version 10) using SVD (), PhyloGene using NPP (), and ProtPhylo using “Hamming” (). PrePhyloPro based on PPP is a complementary online tool for whole proteome linkage predictions. PrePhyloPro includes several visualization methods, including the interact […]

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ProtPhylo institution(s)
Gene Center, Ludwig-Maximilians-University, Munich, Bavaria, Germany
ProtPhylo funding source(s)
Supported by the German Research Foundation (DFG) under the Emmy Noether Programme [PE 2053/1-1]; Bavarian Ministry of Sciences, Research and the Arts in the framework of the Bavarian Molecular Biosystems Research Network [D2-F5121.2-10c/4822].

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