ProTraits specifications

Information


Unique identifier OMICS_14241
Name ProTraits
Alternative name PROkaryotic TRAITS
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Taxon


  • Bacteria
    • Bacillus subtilis
    • Escherichia coli
    • Helicobacter pylori
    • Mycobacterium tuberculosis
    • Mycoplasma pneumoniae
    • Staphylococcus aureus

Maintainer


  • person_outline Anika Oellrich

Publication for PROkaryotic TRAITS

ProTraits citation

library_books

Diversity of Translation Initiation Mechanisms across Bacterial Species Is Driven by Environmental Conditions and Growth Demands

2017
Mol Biol Evol
PMCID: 5850609
PMID: 29220489
DOI: 10.1093/molbev/msx310

[…] es without a high-quality match resulting in 613 bacterial species in our final data set that were used for subsequent analyses. For temperature annotations, we matched this set of 613 species to the ProTraits database using custom scripts, and restricted our analysis to species with temperature annotations exceeding a precision of 0.9 (equivalent to a FDR < 0.1) (). […]

ProTraits institution(s)
Division of Electronics, Ruder Boskovic Institute, Zagreb, Croatia; Mediterranean Institute of Life Sciences, Split, Croatia; EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain
ProTraits funding source(s)
This work was funded by the Croatian Science Foundation grants HRZZ-9623 (DescriptiveInduction) HRZZ- 5660 (MultiCaST), the European Union FP7 grants ICT-2013-612944 (MAESTRA), the REGPOT-2012-2013- 1-316289 (InnoMol), the Spanish Ministry of Economy and Competitiveness, ‘Centro de Excelencia Severo Ochoa 2013-2017’ (SEV-2012- 0208) and the FP7 project 4DCellFate (277899).

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