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Protter specifications

Information


Unique identifier OMICS_06401
Name Protter
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Protter

Protter citations

 (64)
library_books

Discovery and functional characterisation of a luqin type neuropeptide signalling system in a deuterostome

2018
Sci Rep
PMCID: 5940834
PMID: 29740074
DOI: 10.1038/s41598-018-25606-2

[…] igs (1121303 and 1122311) encoding receptors comprising 347 and 388 amino acid residues were identified and named ArLQR1 and ArLQR2, respectively. Analysis of the sequences of ArLQR1 and ArLQR2 using Protter revealed the presence of seven transmembrane domains, a feature common to G-protein coupled receptors (Supplementary Figs  and ). Phylogenetic analysis of relationships of ArLQR1 and ArLQR2 wi […]

call_split

Ammonia Excretion in an Osmoregulatory Syncytium Is Facilitated by AeAmt2, a Novel Ammonia Transporter in Aedes aegypti Larvae

2018
Front Physiol
PMCID: 5905399
PMID: 29695971
DOI: 10.3389/fphys.2018.00339
call_split See protocol

[…] arva.An unrooted maximum likelihood tree based on the JTT matrix-based model was constructed in MEGA7 from multiple sequence alignment of 16 amino acid sequences using Clustal X (Kumar et al., ). The Protter protein visualization software was used to generate the transmembrane plot of AeAmt2 (Omasits et al., ). […]

library_books

Direct coupling of detergent purified human mGlu5 receptor to the heterotrimeric G proteins Gq and Gs

2018
Sci Rep
PMCID: 5849714
PMID: 29535347
DOI: 10.1038/s41598-018-22729-4

[…] N-linked glycosylation sites (NX (S/T)) were first predicted (Protter software) then mutated by a single substitution of the N residues to D making six distinct constructs: N88D (N1), N210D (N2), N378D (N3), N382D (N4), N445D (N5), and N734D (N6). These mutation […]

library_books

Cell Based Reporter System for High Throughput Screening of MicroRNA Pathway Inhibitors and Its Limitations

2018
Front Genet
PMCID: 5835079
PMID: 29535760
DOI: 10.3389/fgene.2018.00045

[…] tivity in a miRNA-dependent but indirect way. Accordingly, we examined stress induction manifested by formation of cytoplasmic, dynamic mRNA-protein structures called stress granules (SG, reviewed in Protter and Parker, ). To screen the compounds for SG formation (Figure ), we first transiently transfected HeLa cells with a plasmid expressing red fluorescent protein (RFP)-tagged TIA-1, a stress gr […]

library_books

A genetic variant in SLC30A2 causes breast dysfunction during lactation by inducing ER stress, oxidative stress and epithelial barrier defects

2018
Sci Rep
PMCID: 5824919
PMID: 29476070
DOI: 10.1038/s41598-018-21505-8

[…] rane proteins is an ER retention signal, and is associated with aggregate formation, or oligomerization, retaining them in the ER. Topology prediction of ZnT2 using ProteinProter (http://wlab.ethz.ch/protter/) displays six transmembrane domains with both N- and C-termini on the cytoplasmic side of the membrane. Because amino acid 288 resides in the cytoplasmic region, one would predict that it wou […]

library_books

UDP Glucuronic Acid Transport Is Required for Virulence of Cryptococcus neoformans

2018
MBio
PMCID: 5790919
PMID: 29382737
DOI: 10.1128/mBio.02319-17

[…] ings (, ). The putative protein topology of Uut1 was predicted using the Constrained Consensus TOPology prediction server (CCTOP; Institute of Enzymology, Budapest, Hungary) (, ) and visualized using Protter (http://wlab.ethz.ch/protter/start/) (). The predicted endoplasmic reticulum (ER) localization signal was identified using LocSigDB (http://genome.unmc.edu/LocSigDB/) (). […]

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Protter institution(s)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Zürich; Institute of Molecular Life Sciences, University of Zürich, Zürich, Switzerland

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