tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

PRUNE

Online

Selects a subset of docking poses generated during sampling search. PRUNE uses a single parameter, interface-area-based edge function that has been shown to time-efficiently select subsets of docking poses for improved scoring and ranking of poses. It calculates the intelligence artificial (IA) of the unrefined docking poses generated between the reference (static) and the mobile molecule. The tool was tested on 922 bound, and 77 unbound binary docking targets covering 193–7658A2 interface ranges.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible

0 user reviews

0 user reviews

No review has been posted.

PRUNE forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.

No open topic.

PRUNE classification

PRUNE specifications

Interface:
Web user interface
Input data:
A receptor coordinate file, a ligand coordinate file, a file containing the transformation matrices for generating docking poses and information on the source of the file format of the transformation matrices.
Programming languages:
Python
Stability:
Stable
Restrictions to use:
None
Input format:
PDB
Computer skills:
Basic
Maintained:
Yes

PRUNE support

Documentation

Maintainer

  • Debnath Pal <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.

Publications

Institution(s)

Bioinformatics Centre and Supercomputer Education Research Centre, Indian Institute of Science, Bangalore, India

Link to literature

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.