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Associated diseases

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PRUNET specifications

Information


Unique identifier OMICS_13473
Name PRUNET
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input data A prior knowledge gene regulatory network, a Booleanized representation of the gene expression profiles of stable phenotypes
Input format TXT
Output data A single (or several) contextualized network(s) optimized to describe the phenotypes according to an adopted dynamical model (Boolean)
Output format TXT
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Medium
Stability Stable
Requirements
ActivePerl, Tk-804.027 Perl, X11
Maintained Yes

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  • person_outline Antonio del Sol <>

Publication for PRUNET

PRUNET in publications

 (22)
PMCID: 5879489
PMID: 29632493
DOI: 10.3389/fphys.2018.00254

[…] metabolic adjustments that are critical to cope with the enhanced energy demand for homeostasis due to stress (sathiyaa and vijayan, ). teleost fish have two different gr paralogs, gr1 and gr2 (prunet et al., ; schaaf et al., ), which are involved in the negative feedback loop of circulating cortisol levels in response to elevated steroids (bonga and wendelaar, ; mommsen et al., ). […]

PMCID: 5807742
PMID: 29459828
DOI: 10.3389/fphys.2018.00013

[…] commercial or financial relationships that could be construed as a potential conflict of interest., we thank c. enesio, f. cabeceira, d. agudelo, b. camera, i. godoy for field assistance, patrick prunet and y. guiguen for sequencing. we thank m. buoro, d. t. blumstein, d. s. samia, a. bardonnet, and u. ellenberg who provided insights on drafts. we also thank the two reviewers: lorenzo gallus […]

PMCID: 5786124
PMID: 29371276
DOI: 10.1136/bmjopen-2017-018745

[…] quality of life and well-being (ie, living and employment conditions, air pollution, exposure to stress) could mediate the association with social status via physiological pathways. in france, prunet et al showed that social status was associated with preterm birth risk independently of use of medical care during pregnancy. as for the association with foreign origin, our results […]

PMCID: 5734726
PMID: 29253015
DOI: 10.1371/journal.pone.0189943

[…] ministry of research (decree n°2001–464, may 29, 2001). at this date, project authorization was not required. experiments were conducted under the official licence of m. dupont-nivet (a29102), p. prunet (07393) and m.l. bégout (17–010)., experimental fish were produced and reared in the inra experimental fish farm (peima, sizun, france). inra homozygous isogenic lines, previously established […]

PMCID: 5601044
PMID: 28955246
DOI: 10.3389/fphys.2017.00683

[…] to various stressors have been well studied, the underlying transcriptional regulation and functional genomics of stress responses can provide a better understanding of stress pathophysiology (prunet et al., ; aluru and vijayan, ; eissa and wang, ). in our recent study on yellow perch stress response, the stress protocol under different water temperatures showed a fluctuant elevation […]


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PRUNET institution(s)
Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg

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