PSAMM specifications


Unique identifier OMICS_20081
Alternative name Portable System for the Analysis of Metabolic Models
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.31
Stability Stable
Requirements PyYAML, IBM ILOG Cplex Optimizer, GUROBI Optimizer, QSopt_ex rational solver, xlrd, xlsxwriter, NumPy
Source code URL
Maintained Yes



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  • person_outline Ying Zhang <>

Additional information

Publication for Portable System for the Analysis of Metabolic Models

PSAMM institution(s)
Department of Cell and Molecular Biology, College of the Environment and Life Sciences, University of Rhode Island, Kingston, RI, USA
PSAMM funding source(s)
Supported by the USDA National Institute of Food and Agriculture, Hatch fund, RI0015-H002, Accession No. 1007170, and a pilot project funded by the Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant number 2 P20 GM103430.

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