PSAT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PSAT
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Tool usage distribution map

This map represents all the scientific publications referring to PSAT per scientific context
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Associated diseases

This word cloud represents PSAT usage per disease context
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Popular tool citations

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Protocols

PSAT specifications

Information


Unique identifier OMICS_22502
Name PSAT
Alternative name Prokaryotic Sequence homology Analysis Tool
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainers


  • person_outline PSAT Team
  • person_outline Mitchell Brittnacher
  • person_outline Christine Fong
  • person_outline Laurence Rohmer
  • person_outline Matthew Radey

Additional information


http://www.nwrce.org/cgi-bin/psat/help_contents.cgi

Information


Unique identifier OMICS_22502
Name PSAT
Alternative name Prokaryotic Sequence homology Analysis Tool
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Database management system PostgreSQL
Computer skills Advanced
Stability Stable
Requirements
Apache, PostgreSQL, PerlMagick
Maintained Yes

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Versioning


No version available

Documentation


Maintainers


  • person_outline PSAT Team
  • person_outline Mitchell Brittnacher
  • person_outline Christine Fong
  • person_outline Laurence Rohmer
  • person_outline Matthew Radey

Additional information


http://www.nwrce.org/cgi-bin/psat/help_contents.cgi

Publication for Prokaryotic Sequence homology Analysis Tool

PSAT citations

 (2)
library_books

COGNAT: a web server for comparative analysis of genomic neighborhoods

2017
Biol Direct
PMCID: 5700660
PMID: 29166914
DOI: 10.1186/s13062-017-0196-z

[…] The possibility to compare gene neighborhoods in prokaryotic genomes is incorporated in such web servers as MicrobesOnline [], PSAT [], and STRING []. In case of MicrobesOnline [], a phylogenetic tree-based genome browser visualizes genomic neighborhoods for homologous genes that are searched by using the FastBLAST routine [] […]

call_split

What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira

2016
PLoS Negl Trop Dis
PMCID: 4758666
PMID: 26890609
DOI: 10.1371/journal.pntd.0004403
call_split See protocol

[…] I/III clusters, a custom Postgresql database was created using the annotated genomes of 20 species. Orthologs were identified with blastp (-F “m S” -s T) and conserved genomic neighborhood using the Prokaryotic Sequence homology Analysis Tool (PSAT) []. […]


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PSAT institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA
PSAT funding source(s)
Supported by the NIH, NIAID award for the Northwest RCE (NWRCE), grant U54AIO57141.

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