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PscanChIP

A web server that, starting from a collection of genomic regions derived from a ChIP-Seq experiment, scans them using motif descriptors like JASPAR or TRANSFAC position-specific frequency matrices, or descriptors uploaded by users, and it evaluates both motif enrichment and positional bias within the regions according to different measures and criteria.

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PscanChIP classification

PscanChIP specifications

Interface:
Web user interface
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Stability:
Stable

PscanChIP distribution

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Publications

Institution(s)

Dipartimento di Bioscienze, Università di Milano, Milano, Italy

Link to literature

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