PSE-HMM specifications


Unique identifier OMICS_13508
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Genome alignement
Input format MAPVIEW, BAM
Output data Genome-wide deletions, tandem duplications, predicted CNV states of genomic segments
Operating system Unix/Linux
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Hamid Pezeshk <>

PSE-HMM article

PSE-HMM institution(s)
School of Mathematics, Statistics and Computer Science, College of Science, University of Tehran, Tehran, Iran; School of Biological Sciences, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran
PSE-HMM funding source(s)
Financial support of INSF (No. 95834244)

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