pseudodynamics statistics

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Citations per year

Number of citations per year for the bioinformatics software tool pseudodynamics

Tool usage distribution map

This map represents all the scientific publications referring to pseudodynamics per scientific context
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pseudodynamics specifications


Unique identifier OMICS_23964
Name pseudodynamics
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages MATLAB
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Fabian Theis

Publication for pseudodynamics

pseudodynamics citation


Predicting Essential Components of Signal Transduction Networks: A Dynamic Model of Guard Cell Abscisic Acid Signaling

PLoS Biol
PMCID: 1564158
PMID: 16968132
DOI: 10.1371/journal.pbio.0040312

[…] point to the node(s) representing the output(s) of the network (here, stomatal closure). The signal–output paths correspond to the propagation of reactions in chemical space, and can be thought of as pseudodynamics []. When only static information is available, pseudodynamics takes into account the graph theoretical properties of the signal transduction network. For example, one can measure the nu […]

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pseudodynamics institution(s)
HelmholzZentrum München, Institute of Computational Biology, Neuherberg, Germany; TUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany; Technical University of Munich, Department of Mathematics, Garching bei München, Germany; Program in Molecular Medicine, Diabetes Center of Excellence, University of Massachusetts Medical School, Worcester, MA, USA
pseudodynamics funding source(s)
Supported by a German research foundation (DFG) fellowship through the Graduate School of Quantitative Biosciences Munich (QBM) [GSC 1006]; by The Leona M. and Harry B. Helmsley Charitable Trust (2015PG-T1D035), a Charles H. Hood Foundation Child Health Research Award, and the Glass Charitable Foundation.

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