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Pseudogene databases | Genome annotation

Pseudogenes are defined as defunct genomic loci with sequence similarity to functional genes but lacking coding potential due to the presence of disruptive mutations such as frame shifts and premature stop codons (Mighell et al., 2000; Harrison et…
psiDR
Dataset

psiDR Pseudogene Decoration resource

Contains genomic information relating to each pseudogene in a consistent…

Contains genomic information relating to each pseudogene in a consistent manner. psiDR provides a variety of activity information for all the surveyed pseudogenes. It can supply potential targets for…

Pseudogene
Dataset

Pseudogene

Gathers information to assist scientists in research of pseudogene annotation.…

Gathers information to assist scientists in research of pseudogene annotation. Pseudogene is a searchable repository for all protein-coding derived pseudogenes identified in the literature. This…

Pseudofam
Dataset

Pseudofam

Provides information about the family structure of pseudogenes. The Pseudofam…

Provides information about the family structure of pseudogenes. The Pseudofam resource assists users in working about query tools, statistical summaries and sequence alignments. This database offers…

psiCube
Dataset

psiCube

Gathers information about pseudogene annotation in human, worm and fly. psiCube…

Gathers information about pseudogene annotation in human, worm and fly. psiCube compiles the data resulting from annotation and comparative analysis of pseudogenes using the GENCODE 10 for human…

HOPPSIGEN
Dataset

HOPPSIGEN HOmologous Processed PseudoGENes

Provides information about processed pseudogenes location, potential function,…

Provides information about processed pseudogenes location, potential function, base composition and gene structure in human and mouse. HOPPSIGEN is a nucleic acid database that can be useful in…

dreamBase
Web

dreamBase

Provides regulatory evidence of the transcription, RNA regulation and protein…

Provides regulatory evidence of the transcription, RNA regulation and protein binding features of potentially expressed pseudogenes. dreamBase is a comprehensive and powerful platform to decode the…

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