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Pseudogene detection software tools | Genome annotation

The identification of pseudogenes is an integral and significant part of the genome annotation because of their abundance and their impact on the experimental analysis of functional genes. Most of the computational annotation systems are not…
PPFINDER
Desktop

PPFINDER Processed Pseudogene Finder

Intends to identify processed pseudogenes that have been incorporated into gene…

Intends to identify processed pseudogenes that have been incorporated into gene models in any mammalian genome annotation. PPFINDER combines two different approaches: intron location method and…

PseudoPipe
Desktop

PseudoPipe

Allows users to identify pseudogenes sequences from genomes. PseudoPipe…

Allows users to identify pseudogenes sequences from genomes. PseudoPipe principally focuses on pseudogenes unable to be translated into proteins and can provide a complete annotation of the…

PseudoDomain
Desktop

PseudoDomain

Allows users to identify pseudogenes by using protein domain classification.…

Allows users to identify pseudogenes by using protein domain classification. PseudoDomain can detect pseudogenes from genome with or without gene annotations and intends to improve their…

pseudoMap
Dataset

pseudoMap

Gathers information about transcribed pseudogenes (TPGs) and explores the…

Gathers information about transcribed pseudogenes (TPGs) and explores the relationships between TPG and its cognate gene with miRNA decoyed mechanisms and TPG-derived eSTIs. PseudoMap furnishes an…

PseudoGeneQuest
Web

PseudoGeneQuest

Allows users to detect pseudogenes candidates from the human genome.…

Allows users to detect pseudogenes candidates from the human genome. PseudoGeneQuest aims to identify all types of pseudogenes and pseudogene fragments in the human genome using user provided query…

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