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chevron_left Alternative splicing events identification Known transcript quantification Read alignment Differential usage chevron_right
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PSGInfer specifications

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Unique identifier OMICS_01967
Name PSGInfer
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTQ+GT +FASTA
Operating system Unix/Linux
Programming languages Java, Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2.1
Stability Stable
Requirements
Bowtie
Maintained Yes

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  • person_outline Colin Dewey <>

Publication for PSGInfer

PSGInfer in publication

PMCID: 4271460
PMID: 25511303
DOI: 10.1186/s12859-014-0364-4

[…] it., for example, under these criteria, some methods are ruled out for inclusion in this study. e.g., splicetrap [] only quantifies alternative splicing within a single condition and miso [] and psginfer [] do not support biological replicates. our list of programs is not exhaustive; however, we have selected a set of programs which represent a variety of approaches. due to our limited human […]

PSGInfer institution(s)
Department of Computer Sciences, University of Wisconsin, Madison, WI, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA
PSGInfer funding source(s)
Supported by National Institutes of Health (HG005232).

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