PSI-BLAST pipeline

PSI-BLAST specifications

Information


Unique identifier OMICS_13701
Name PSI-BLAST
Alternative names Position-Specific Iterated Basic Local Alignment Search Tool, PSI-BLASTexB, PSIBLAST
Interface Web user interface, Application programming interface
Restrictions to use None
Input data Protein sequence
Input format GCG, FASTA, EMBL, GenBank, PIR, NBRF, Phylip, UniProtKB/Swiss-Prot
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Stephen Altschul <>

Additional information


PSI-BLASTexB: https://github.com/kyungtaekLIM/PSI-BLASTexB

Information


Unique identifier OMICS_13701
Name PSI-BLAST
Alternative names Position-Specific Iterated Basic Local Alignment Search Tool, PSI-BLASTexB, PSIBLAST
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C, C++, Shell (Bash)
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Stephen Altschul <>

Additional information


PSI-BLASTexB: https://github.com/kyungtaekLIM/PSI-BLASTexB

Publications for Position-Specific Iterated Basic Local Alignment Search Tool

PSI-BLAST citation

2012
PMCID: 3553980

[…] describe a novel ssr system vika/vox and show that it is a valuable genome engineering instrument in bacteria and in mammalian cells., the search for potential cre-like ssrs was performed using the position-specific iterated basic local alignment search tool (blast) algorithm [psi-blast/national center for biotechnology information (ncbi)] on the non-redundant sequences in the public dna […]

PSI-BLAST institution(s)
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health Bethesda, MD, USA
PSI-BLAST funding source(s)
This work was supported by Intramural Research Program of the National Library of Medicine of the National Institutes of Health.

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