PSIbase specifications

Information


Unique identifier OMICS_02972
Name PSIbase
Restrictions to use None
Maintained No

Publication for PSIbase

PSIbase citations

 (2)
library_books

Study of intra–inter species protein–protein interactions for potential drug targets identification and subsequent drug design for Escherichia coli O104:H4 C277 11

2017
PMCID: 5391048
PMID: 28401513
DOI: 10.1007/s40203-017-0021-5

[…] ere assigned with Structural Classification of Proteins (SCOP) 1.75 database using SUPER FAMILY 1.75 with an e-value cutoff 0.0001 (de Lima Morais et al. ). SCOP domains were further submitted to the PSIbase database which is based on Protein Structural Interactome map (PSIMAP) information to obtain interaction partners (Gong et al. ). A comparison of the protein sequences of E. coli O104:H4 str. […]

library_books

Deciphering peculiar protein protein interacting modules in Deinococcus radiodurans

2009
Biol Direct
PMCID: 2672081
PMID: 19356244
DOI: 10.1186/1745-6150-4-12

[…] that belongs to the same protein and also to different proteins. Initially, the domains were grouped by the protein classes they belong to. They were subsequently matched using shell script with the psibase 1.71 data to find putative domain interactions. Thus, 9 networks implicated in different biological processes were found.Domain networks were then grouped by biological processes and metabolis […]

PSIbase institution(s)
Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea

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