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PSLpred specifications

Information


Unique identifier OMICS_06615
Name PSLpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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No version available

Maintainer


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Unique identifier OMICS_06615
Name PSLpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for PSLpred

PSLpred citations

 (26)
library_books

Outer membrane vesicles from Neisseria gonorrhoeae target PorB to mitochondria and induce apoptosis

2018
PLoS Pathog
PMCID: 5877877
PMID: 29601598
DOI: 10.1371/journal.ppat.1006945

[…] for subcellular localization using four different available online bacterial protein subcellular localization (scl) predictor tools, psortb version 3.0.2 [], subloc v1.0 [], cello 2.5 [] and pslpred []. the predicted subcellular component was assigned based on majority votes. the identified protein was annotated as unknown subcellular localization in a case where all four tools predicted […]

library_books

Small Myristoylated Protein 3, Identified as a Potential Virulence Factor in Leishmania amazonensis, Proves to be a Protective Antigen against Visceral Leishmaniasis

2018
Int J Mol Sci
PMCID: 5796078
PMID: 29301342
DOI: 10.3390/ijms19010129

[…] and test them as vaccine candidates against leishmaniasis in mammalian hosts []. the amino acid sequences of the 56 proteins were submitted to a functional annotation protocol. for this, the psortb, pslpred, cello, wolfpsort, signalp 4.1, secretomep, tmhmm, superfamily, cath, smart, and interpro servers, which were combined with a statistical estimation of diagnostic accuracy, were used […]

library_books

In silico analysis to identify vaccine candidates common to multiple serotypes of Shigella and evaluation of their immunogenicity

2017
PLoS One
PMCID: 5540609
PMID: 28767653
DOI: 10.1371/journal.pone.0180505

[…] following localization prediction softwares: psortb (http://www.psort.org/psortb/index.html) [], cello (http://cello.life.nctu.edu.tw/) [], subloc (http://www.bioinfo.tsinghua.edu.cn/subloc/) [] and pslpred (http://www.imtech.res.in/raghava/submit.html) []. for localization predictions, the protein sequences were taken in fasta format, the organism type was chosen as ‘bacteria’, gram stain […]

library_books

A Small Wolbachia Protein Directly Represses Phage Lytic Cycle Genes in “Candidatus Liberibacter asiaticus” within Psyllids

2017
PMCID: 5463029
PMID: 28608866
DOI: 10.1128/mSphereDirect.00171-17

[…] also satisfied the required search criteria: (i) small size (6.65 kda); (ii) predicted dna binding potential (dnabinder) (); (iii) predicted to be secreted (secretomep 2.0) (); (iv) extracellular (pslpred) (). the 56-amino-acid (aa) putative repressor protein was encoded by wdiac_rs0101550 annotated on contig49.1 (genbank accession number nz_amzj01000058.1) from the draft metagenome assembly […]

library_books

Sequence Analysis of Hypothetical Proteins from Helicobacter pylori 26695 to Identify Potential Virulence Factors

2016
PMCID: 5056897
PMID: 27729842
DOI: 10.5808/GI.2016.14.3.125

[…] often play an essential role in virulence related activities such as adherence to host cells. we used an array of tools to carry out the subcellular localization of the hps. we used psortb [], pslpred [], and cello [] to predict the location of hps in the cell. these predictors use experimental data from known proteins to make predictions for query proteins using their fasta sequences. […]

library_books

Effects of lng Mutations on LngA Expression, Processing, and CS21 Assembly in Enterotoxigenic Escherichia coli E9034A

2016
Front Microbiol
PMCID: 4971541
PMID: 27536289
DOI: 10.3389/fmicb.2016.01201

[…] localization was predicted using the following servers: cello v.2.5, from the molecular bioinformatics center (http://cello.life.nctu.edu.tw/), which is an amino acid composition-based method; pslpred from the bioinformatics center institute of microbial technology (http://www.imtech.res.in/raghava/pslpred/); and psortb version 3.0.2 from the brinkman laboratory, simon fraser university […]


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PSLpred institution(s)
Institute of Microbial Technology, Chandigarh, India

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