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PSLpred specifications

Information


Unique identifier OMICS_06615
Name PSLpred
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


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Unique identifier OMICS_06615
Name PSLpred
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


Publication for PSLpred

PSLpred in publications

 (26)
PMCID: 5877877
PMID: 29601598
DOI: 10.1371/journal.ppat.1006945

[…] for subcellular localization using four different available online bacterial protein subcellular localization (scl) predictor tools, psortb version 3.0.2 [], subloc v1.0 [], cello 2.5 [] and pslpred []. the predicted subcellular component was assigned based on majority votes. the identified protein was annotated as unknown subcellular localization in a case where all four tools predicted […]

PMCID: 5796078
PMID: 29301342
DOI: 10.3390/ijms19010129

[…] and test them as vaccine candidates against leishmaniasis in mammalian hosts []. the amino acid sequences of the 56 proteins were submitted to a functional annotation protocol. for this, the psortb, pslpred, cello, wolfpsort, signalp 4.1, secretomep, tmhmm, superfamily, cath, smart, and interpro servers, which were combined with a statistical estimation of diagnostic accuracy, were used […]

PMCID: 5540609
PMID: 28767653
DOI: 10.1371/journal.pone.0180505

[…] following localization prediction softwares: psortb (http://www.psort.org/psortb/index.html) [], cello (http://cello.life.nctu.edu.tw/) [], subloc (http://www.bioinfo.tsinghua.edu.cn/subloc/) [] and pslpred (http://www.imtech.res.in/raghava/submit.html) []. for localization predictions, the protein sequences were taken in fasta format, the organism type was chosen as ‘bacteria’, gram stain […]

PMCID: 5463029
PMID: 28608866
DOI: 10.1128/mSphereDirect.00171-17

[…] also satisfied the required search criteria: (i) small size (6.65 kda); (ii) predicted dna binding potential (dnabinder) (); (iii) predicted to be secreted (secretomep 2.0) (); (iv) extracellular (pslpred) (). the 56-amino-acid (aa) putative repressor protein was encoded by wdiac_rs0101550 annotated on contig49.1 (genbank accession number nz_amzj01000058.1) from the draft metagenome assembly […]

PMCID: 5056897
PMID: 27729842
DOI: 10.5808/GI.2016.14.3.125

[…] often play an essential role in virulence related activities such as adherence to host cells. we used an array of tools to carry out the subcellular localization of the hps. we used psortb [], pslpred [], and cello [] to predict the location of hps in the cell. these predictors use experimental data from known proteins to make predictions for query proteins using their fasta sequences. […]


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PSLpred institution(s)
Institute of Microbial Technology, Chandigarh, India

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