Protocols

pslToBed specifications

Information


Unique identifier OMICS_17285
Name pslToBed
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data PSL
Output format BED
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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pslToBed citation

call_split

Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters

2017
BMC Genomics
PMCID: 5576322
PMID: 28851275
DOI: 10.1186/s12864-017-4083-x
call_split See protocol

[…] rthologous genes []. In addition, we aligned the 16,172 CDS predicted in the old annotation against the new genome assembly using Blat []. After filtering with pslReps, the results were exported with pslToBed into BEDtools [] to find the correspondence between the old and new CDS predictions. […]

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