PSMix specifications

Information


Unique identifier OMICS_15575
Name PSMix
Alternative name Population Structure inference via MIXture model
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Genotype data should be stored in a dataframe or matrix format, with columns being marker information and two consecutive rows denoting the genotypes of each individual.
Output data A list containing: PIk (estimated probability of belonging to each subpopulation for each individual), Zimak (estimated probability of belonging to each population for each allele and estimated origin of allele for ith individual, at mth marker, on ath allele copy) and Gkmj (estimated allele frequencies for each subpopulation).
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.1-2
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Hongyu Zhao <>

Publication for Population Structure inference via MIXture model

PSMix funding source(s)
This work was supported in part by NIH grants GM59507 and GM57672.

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