PSORT pipeline

PSORT specifications

Information


Unique identifier OMICS_01634
Name PSORT
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/PSORT

Publication for PSORT

PSORT IN pipelines

 (12)
2017
PMCID: 5481527
PMID: 28585301
DOI: 10.1111/1751-7915.12731

[…] or n. sennetsu is not located at upstream of any of genes encoding the major omps of n. helminthoeca including p51, ssa or nsps (table 4)., a. location of outer member proteins is predicted by the psort‐b algorithm (http://psort.org/psortb). other putative omps (p51, nsp1/2/3 and ssa) are determined by homology searches to n. risticii and n. sennetsu protein database using blastp., the present […]

2017
PMCID: 5481527
PMID: 28585301
DOI: 10.1111/1751-7915.12731

[…] at upstream of any of genes encoding the major omps of n. helminthoeca including p51, ssa or nsps (table 4)., a. location of outer member proteins is predicted by the psort‐b algorithm (http://psort.org/psortb). other putative omps (p51, nsp1/2/3 and ssa) are determined by homology searches to n. risticii and n. sennetsu protein database using blastp., the present study identified several […]

2017
PMCID: 5604158
PMID: 28923004
DOI: 10.1186/s12864-017-4114-7

[…] (ncbi) with a threshold e-value of 10−5. best hits associated with experimentally characterization and/or publications were reported. the presence of nls and coiled coil regions were inferred with psort ii prediction at http://psort1.hgc.jp/. n-terminal signal peptides and cleavage sites were predicted using signalp at http://www.cbs.dtu.dk/services/signalp/. to further confirm […]

2017
PMCID: 5604158
PMID: 28923004
DOI: 10.1186/s12864-017-4114-7

[…] of 10−5. best hits associated with experimentally characterization and/or publications were reported. the presence of nls and coiled coil regions were inferred with psort ii prediction at http://psort1.hgc.jp/. n-terminal signal peptides and cleavage sites were predicted using signalp at http://www.cbs.dtu.dk/services/signalp/. to further confirm that the sequence similarity […]

2016
PMCID: 4772473
PMID: 26928424
DOI: 10.1038/srep22438

[…] prediction only; s: function unknown)., abased on r. anatipestifer yb2 genome (accession number: cp007204)., bsubcellular locations were predicted by the psortb version 3.0 server (http://www.psort.org/)., cfunctional characterization of the proteins was predicted by searching against eggnog (version 3) database using blastp., dno related cog., eresults are presented as 2δδct. figures = 1 […]

PSORT institution(s)
Institute for Molecular and Cellular Biology, Osaka University, Japan

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