PSORT protocols

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PSORT specifications

Information


Unique identifier OMICS_01634
Name PSORT
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/PSORT

Publication for PSORT

PSORT in pipelines

 (62)
2018
PMCID: 5753508
PMID: 29298673
DOI: 10.1186/s12864-017-4407-x

[…] calculation of percentage of genome masked by each repeat class, the ungapped genome size was used., subcellular localization for all v. longisporum vl1 and vl2 proteins were predicted using wolf psort v0.2 software []. the resulting putative extracellular group of proteins was further screened for the presence of signal peptides and signal peptide cleavage sites using the signalp v4.0 […]

2018
PMCID: 5844311
PMID: 29326229
DOI: 10.1534/g3.117.300421

[…] protein2genome–percentage 90. pathway and kog prediction were assessed using kaas (bidirectional best hit) (). putative secreted proteins were identified using signalp 4.1 () and wolf psort 0.2 (). secreted proteins were assessed for the presence of transmembrane helices by phobius () and thmmh 2.0 (). cyps were predicted as described elsewhere (). cyp proteins that could […]

2018
PMCID: 5875394
PMID: 29607258
DOI: 10.7717/peerj.4532

[…] were identified using the normal mode of the simple modular architecture research tool () and prosite database. cellular localization of the inferred amino acid sequence was carried out with the psort prediction tool of the psort www server. a multiple sequence alignment was generated using the clustal version 2.0 program (). a phylogenetic tree was then produced by the neighbor-joining (nj) […]

2017
PMCID: 5292702
PMID: 28165023
DOI: 10.1038/srep42062

[…] as >0.75., gene ontology (go) annotation was generated using the uniprot-goa database (http://www.ebi.ac.uk/goa/), supplement with the interproscan soft. the updated version of wolfpsort, psort/psort ii, was used to predict subcellular localization. the protein pathways were annotated from the kyoto encyclopedia of genes and genomes (kegg) database. manually curated corum protein […]

2017
PMCID: 5296326
PMID: 28228766
DOI: 10.3389/fpls.2017.00126

[…] the catalytic domain of each family. prediction of characteristic domains and conserved motifs was carried out through smart (http://smart.embl-heidelberg.de/; schultz et al., ; letunic et al., ), psort (http://psort.hgc.jp/form.html), interproscan (http://www.ebi.ac.uk/tools/pfa/iprscan/) and big-pi plant predictor (http://mendel.imp.ac.at/gpi/plant_server.html) servers. phylogenetic trees […]

PSORT in publications

 (1271)
PMCID: 5951830
PMID: 29760464
DOI: 10.1038/s41467-018-04250-4

[…] and detected the tagged protein by immunostaining. as shown in fig. , yrdc was widely diffused throughout the cell, but tended to be more strongly localized to the cytoplasm. as determined by wolf psort, a tool for predicting protein localization, yrdc has an n-terminal mitochondrial targeting sequence (mts) (supplementary fig.  and fig. ), implying mitochondrial localization. to confirm […]

PMCID: 5946511
PMID: 29747590
DOI: 10.1186/s12864-018-4745-3

[…] were also enriched as performed in go enrichment and further classified into hierarchical categories according to the kegg website. subcellular localizations of the protein were predicted by wolf psort (http://wolfpsort.seq.cbrc.jp/) []., due to absence of protein information of a. longirostris in the string database, all identified acetylated protein sequences in a. longirostris were aligned […]

PMCID: 5936033
PMID: 29728113
DOI: 10.1186/s12917-018-1465-5

[…] in japanese quails. this specific region within the n-terminus of vp1 contains high arginine content and might confer an ability to vp1 to bind and protect dna []. using online software, including psort ii (http://psort.hgc.jp) and dp-bind (lcg.rit.albany.edu/dp-bind/), the vp1 protein was analysed in this study. a total of four putative dna-binding motifs and two putative nlss were found […]

PMCID: 5935958
PMID: 29728059
DOI: 10.1186/s12870-018-1297-2

[…] according to roelfs’ standard []., expasyprotparam and protscale were employed to determine the amino acids compositions, physical and chemical properties and the hydrophobicity or hydrophilicity. psort prediction (http://psort.hgc.jp/form.html)and targetp (http://www.cbs.dtu.dk/services/targetp/) were used to analyze the subcellular localization. prediction of signal peptide was performed […]

PMCID: 5942036
PMID: 29770142
DOI: 10.3389/fpls.2018.00562

[…] from c. higginsianum using two independent approaches. based on the fungal genome annotation, we identified 365 candidate secreted effector proteins (cseps) defined as extracellular proteins (wolf psort prediction) without homology to proteins from organisms outside the genus colletotrichum (). based on mining est data from deep-sequencing in planta cdna libraries, we found 102 checs based […]

PSORT institution(s)
Institute for Molecular and Cellular Biology, Osaka University, Japan

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