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Protocols

PSORT specifications

Information


Unique identifier OMICS_01634
Name PSORT
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/PSORT

Publication for PSORT

PSORT citations

 (1283)
library_books

CO2 sensitive tRNA modification associated with human mitochondrial disease

2018
Nat Commun
PMCID: 5951830
PMID: 29760464
DOI: 10.1038/s41467-018-04250-4

[…] and detected the tagged protein by immunostaining. as shown in fig. , yrdc was widely diffused throughout the cell, but tended to be more strongly localized to the cytoplasm. as determined by wolf psort, a tool for predicting protein localization, yrdc has an n-terminal mitochondrial targeting sequence (mts) (supplementary fig.  and fig. ), implying mitochondrial localization. to confirm […]

library_books

First comprehensive analysis of lysine acetylation in Alvinocaris longirostris from the deep sea hydrothermal vents

2018
BMC Genomics
PMCID: 5946511
PMID: 29747590
DOI: 10.1186/s12864-018-4745-3

[…] were also enriched as performed in go enrichment and further classified into hierarchical categories according to the kegg website. subcellular localizations of the protein were predicted by wolf psort (http://wolfpsort.seq.cbrc.jp/) []., due to absence of protein information of a. longirostris in the string database, all identified acetylated protein sequences in a. longirostris were aligned […]

library_books

Characterization of the DNA binding activity of structural protein VP1 from chicken anaemia virus

2018
PMCID: 5936033
PMID: 29728113
DOI: 10.1186/s12917-018-1465-5

[…] in japanese quails. this specific region within the n-terminus of vp1 contains high arginine content and might confer an ability to vp1 to bind and protect dna []. using online software, including psort ii (http://psort.hgc.jp) and dp-bind (lcg.rit.albany.edu/dp-bind/), the vp1 protein was analysed in this study. a total of four putative dna-binding motifs and two putative nlss were found […]

library_books

Functional analysis of a pathogenesis related thaumatin like protein gene TaLr35PR5 from wheat induced by leaf rust fungus

2018
BMC Plant Biol
PMCID: 5935958
PMID: 29728059
DOI: 10.1186/s12870-018-1297-2

[…] according to roelfs’ standard []., expasyprotparam and protscale were employed to determine the amino acids compositions, physical and chemical properties and the hydrophobicity or hydrophilicity. psort prediction (http://psort.hgc.jp/form.html)and targetp (http://www.cbs.dtu.dk/services/targetp/) were used to analyze the subcellular localization. prediction of signal peptide was performed […]

library_books

Subcellular Localization Screening of Colletotrichum higginsianum Effector Candidates Identifies Fungal Proteins Targeted to Plant Peroxisomes, Golgi Bodies, and Microtubules

2018
Front Plant Sci
PMCID: 5942036
PMID: 29770142
DOI: 10.3389/fpls.2018.00562

[…] from c. higginsianum using two independent approaches. based on the fungal genome annotation, we identified 365 candidate secreted effector proteins (cseps) defined as extracellular proteins (wolf psort prediction) without homology to proteins from organisms outside the genus colletotrichum (). based on mining est data from deep-sequencing in planta cdna libraries, we found 102 checs based […]

library_books

Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species

2018
Sci Rep
PMCID: 5919931
PMID: 29700415
DOI: 10.1038/s41598-018-25016-4

[…] domains. the presence of er retention signal was predicted using ps scan with prosite (https://prosite.expasy.org/) pattern ps00014. the subcellular localization of proteins was predicted using wolf psort 0.2 (https://psort.hgc.jp/), targetp 1.1 (http://www.cbs.dtu.dk/services/targetp/) and protcomp 9 (http://www.softberry.com/berry.phtml?topic=protcomp&group=help&subgroup=proloc). […]


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PSORT institution(s)
Institute for Molecular and Cellular Biology, Osaka University, Japan

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