psRNATarget protocols

psRNATarget specifications

Information


Unique identifier OMICS_00414
Name psRNATarget
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for psRNATarget

psRNATarget IN pipelines

 (5)
2018
PMCID: 5759179
PMID: 29354114
DOI: 10.3389/fmicb.2017.02630

[…] (0.932) was applied to predicted mirna hairpins., micrornas function by providing a complementary sequence to parts of their target mrna. this can be predicted by diverse computational tools. here, psrnatarget (2011 release) (dai and zhao, 2011) was used to establish mirna—mrna interactions using default settings. while psrnatarget originally focused on plant mirna targeting, it now also […]

2018
PMCID: 5759179
PMID: 29354114
DOI: 10.3389/fmicb.2017.02630

[…] target mrna. this can be predicted by diverse computational tools. here, psrnatarget (2011 release) (dai and zhao, 2011) was used to establish mirna—mrna interactions using default settings. while psrnatarget originally focused on plant mirna targeting, it now also includes metazoan mrnas for targeting as well as the possibility to provide mirnas and putative targets directly. microrna […]

2018
PMCID: 5759179
PMID: 29354114
DOI: 10.3389/fmicb.2017.02630

[…] mrnas for targeting as well as the possibility to provide mirnas and putative targets directly. microrna regulation seems to be metazoan like in t. gondii (braun et al., 2010) and, therefore, psrnatarget seemed suitable for this analysis and the default settings were used for the analysis of t. gondii. all of the genes of the available transcript annotations for t. gondii were used […]

2017
PMCID: 5465084
PMID: 28596514
DOI: 10.1038/s41598-017-02233-x

[…] genes with unknown functions are lincrna genes21. this phenomenon has also been reported in recent studies on rice22., for these 91 phas loci, mirna binding site prediction was performed using the psrnatarget pipeline (table s3). degradome datasets produced from tomato leaves, roots, and fruits were applied as the experimental supports for the identification of potential phasirna triggers. […]

2016
PMCID: 5099690
PMID: 27877179
DOI: 10.3389/fpls.2016.01632

[…] method, and corrected p-value of 0.05 was set as a threshold for significant differential expression by default (love et al., 2014)., the target genes of mirnas were predicted with the web-based psrnatarget program (http://plantgrn.noble.org/psrnatarget/) (dai and zhao, 2011). the gene ontology (go)-biological process and kyoto encyclopedia of genes and genomes (kegg) pathway terms enriched […]

psRNATarget institution(s)
Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK, USA

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