PsRobot statistics

Tool stats & trends

Looking to identify usage trends or leading experts?


PsRobot specifications


Unique identifier OMICS_04009
Name PsRobot
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PsRobot

PsRobot citations


Genome wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep

Sci Rep
PMCID: 5700919
PMID: 29170496
DOI: 10.1038/s41598-017-16344-y

[…] lation.Some reports have shown that circRNAs, such as ceRNAs, influence post-transcriptional regulation by targeting miRNAs–. We have identified miRNA target sites in sheep circRNAs using miRanda and psRobot. Furthermore, we determined that various circRNAs interact with different pituitary gland-related miRNAs, such as miR-181, miR-133, miR-26, and miR-329 (Table ). In addition, we observed that […]


Genome wide analysis of circular RNAs in prenatal and postnatal muscle of sheep

PMCID: 5722553
PMID: 29228601
DOI: 10.18632/oncotarget.21835

[…] study, a total of 286956 interactions were observed with the various miRNAs in the identified 6113 circRNAs, and the interaction between the circRNAs and the miRNAs were analyzed by using miRanda and psRobot (). It is noteworthy that several well-known miRNAs are closely related to growth and development of skeletal muscle, which are considered to be promising candidates for future research. For e […]


Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases

PMCID: 5615367
PMID: 28925938
DOI: 10.3390/genes8090234

[…] presence of unexpected viral or bacterial RNA molecules.miRNAconsTarget: consensus target prediction on user-provided input data based on Miranda [], PITA [] and TargetSpy [] for animal microRNAs and PsRobot [] and TAPIR (target prediction for plant microRNAs) [] for plant microRNAs.sRNAjBrowser: visualization of sRNA expression data in a genome context using jBrowse [].sRNAjBrowserDE: visualizati […]


In Silico Analysis of Small RNAs Suggest Roles for Novel and Conserved miRNAs in the Formation of Epigenetic Memory in Somatic Embryos of Norway Spruce

Front Physiol
PMCID: 5596105
PMID: 28943851
DOI: 10.3389/fphys.2017.00674

[…] ere miRNAs act in synergy with other transcription regulators to establish gene regulatory networks (Herranz and Cohen, ).We want to highlight the predictive nature of our in silico predictions using psRobot and psRNATarget analysis server and that future experimental validation studies are needed to confirm or refute our predictions. Notwithstanding, in most cases when we found inverse relations […]


The effects of potato virus Y derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

Virol J
PMCID: 5513076
PMID: 28716126
DOI: 10.1186/s12985-017-0803-8

[…] 1 and 24 nt long and had at least 50 copies aligned to the respective PVY genomes were considered as query vsiRNAs for target transcript prediction analysis.The vsiRNAs profile was used as a query in psRobot small RNA target prediction algorithm utilizing the following default settings: target penalty score threshold – 2.5, five prime boundary of essential sequence – 2, three prime boundary of ess […]


Integrated analysis of tobacco miRNA and mRNA expression profiles under PVY infection provids insight into tobacco PVY interactions

Sci Rep
PMCID: 5501784
PMID: 28687775
DOI: 10.1038/s41598-017-05155-w
call_split See protocol

[…] which satisfied FDR ≤ 0.05 and log2|fold change| >  = 1 were considered as significantly differential expressed miRNAs (DEM) between the two groups.Target genes of the DEMs were predicted by software psRobot.Libraries of RNA were sequenced on the Illumina Hiseq 2500 platform and sequencing reads that contained polyA/T and adapters were discarded, and reads with low quality and high Ns were pre-fil […]


Looking to check out a full list of citations?

PsRobot institution(s)
The State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China

PsRobot reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PsRobot