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Citations per year

Number of citations per year for the bioinformatics software tool PsRobot
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Tool usage distribution map

This map represents all the scientific publications referring to PsRobot per scientific context
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Protocols

PsRobot specifications

Information


Unique identifier OMICS_04009
Name PsRobot
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PsRobot

PsRobot citations

 (11)
library_books

Genome wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep

2017
Sci Rep
PMCID: 5700919
PMID: 29170496
DOI: 10.1038/s41598-017-16344-y

[…] lation.Some reports have shown that circRNAs, such as ceRNAs, influence post-transcriptional regulation by targeting miRNAs–. We have identified miRNA target sites in sheep circRNAs using miRanda and psRobot. Furthermore, we determined that various circRNAs interact with different pituitary gland-related miRNAs, such as miR-181, miR-133, miR-26, and miR-329 (Table ). In addition, we observed that […]

library_books

Genome wide analysis of circular RNAs in prenatal and postnatal muscle of sheep

2017
Oncotarget
PMCID: 5722553
PMID: 29228601
DOI: 10.18632/oncotarget.21835

[…] study, a total of 286956 interactions were observed with the various miRNAs in the identified 6113 circRNAs, and the interaction between the circRNAs and the miRNAs were analyzed by using miRanda and psRobot (). It is noteworthy that several well-known miRNAs are closely related to growth and development of skeletal muscle, which are considered to be promising candidates for future research. For e […]

library_books

Circulating microRNAs and Bioinformatics Tools to Discover Novel Diagnostic Biomarkers of Pediatric Diseases

2017
Genes
PMCID: 5615367
PMID: 28925938
DOI: 10.3390/genes8090234

[…] presence of unexpected viral or bacterial RNA molecules.miRNAconsTarget: consensus target prediction on user-provided input data based on Miranda [], PITA [] and TargetSpy [] for animal microRNAs and PsRobot [] and TAPIR (target prediction for plant microRNAs) [] for plant microRNAs.sRNAjBrowser: visualization of sRNA expression data in a genome context using jBrowse [].sRNAjBrowserDE: visualizati […]

library_books

In Silico Analysis of Small RNAs Suggest Roles for Novel and Conserved miRNAs in the Formation of Epigenetic Memory in Somatic Embryos of Norway Spruce

2017
Front Physiol
PMCID: 5596105
PMID: 28943851
DOI: 10.3389/fphys.2017.00674

[…] ere miRNAs act in synergy with other transcription regulators to establish gene regulatory networks (Herranz and Cohen, ).We want to highlight the predictive nature of our in silico predictions using psRobot and psRNATarget analysis server and that future experimental validation studies are needed to confirm or refute our predictions. Notwithstanding, in most cases when we found inverse relations […]

library_books

The effects of potato virus Y derived virus small interfering RNAs of three biologically distinct strains on potato (Solanum tuberosum) transcriptome

2017
Virol J
PMCID: 5513076
PMID: 28716126
DOI: 10.1186/s12985-017-0803-8

[…] ://ftp.ensemblgenomes.org/pub/plants/release-35/fasta/solanum_tuberosum/ncrna/) [] using the same settings as above. Biovenn (http://www.cmbi.ru.nl/cdd/biovenn/) [] was used to make comparisons among psRobot predicted target coding transcripts for vsiRNAs of PVY-N, −NTN and -O strains and for psRNATarget predicted target ncRNA transcripts []. Comparisons/ overlaps were also made for transcript pre […]

call_split

Integrated analysis of tobacco miRNA and mRNA expression profiles under PVY infection provids insight into tobacco PVY interactions

2017
Sci Rep
PMCID: 5501784
PMID: 28687775
DOI: 10.1038/s41598-017-05155-w
call_split See protocol

[…] which satisfied FDR ≤ 0.05 and log2|fold change| >  = 1 were considered as significantly differential expressed miRNAs (DEM) between the two groups.Target genes of the DEMs were predicted by software psRobot.Libraries of RNA were sequenced on the Illumina Hiseq 2500 platform and sequencing reads that contained polyA/T and adapters were discarded, and reads with low quality and high Ns were pre-fil […]


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PsRobot institution(s)
The State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China

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