PSSH specifications


Unique identifier OMICS_19715
Alternative name Protein Sequence-to-Structure Homologies
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Publication for Protein Sequence-to-Structure Homologies

PSSH citation


Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug resistant Salmonella enterica serovar Typhimurium

PMCID: 5836442
PMID: 29515658
DOI: 10.1186/s13099-018-0236-y

[…] Reads were aligned to the S. Typhimurium SL1344 genome (GenBank Accession Number FQ312003.1), its three plasmids (GenBank Accession Numbers HE654724-26), and the MDR S. Heidelberg plasmid psSH163_35 (GenBank Accession Number JN983045) using Bowtie 2 v. 2.2.9 [] with the default parameters for the very-sensitive-local setting. The program HTSeq v. 0.6.1 [] was used to quantify the numbe […]

PSSH institution(s)
Lion Bioscience AG, Heidelberg, Germany
PSSH funding source(s)
Partly supported by a grant from the German Federal Ministry for Science and Education (‘Protein Structure Factory’ grant 01 GG 9817).

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