PSST specifications

Information


Unique identifier OMICS_24722
Name PSST
Alternative name Polygenic SNP Search Tool
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data A file where each line corresponds to a unique SNP rs-accessions and either another file containing unique SRA accessions.
Input format TXT,FASTQ
Output data A file describing which SNPs are contained in the SRA datasets.
Output format TSV
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

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Additional information


https://researchfestival.nih.gov/2017/posters/psst-tool-detecting-multiple-snps-ngs-datasets

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