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PTIR specifications


Unique identifier OMICS_11940
Alternative name Predicted Tomato Interactome Resource
Restrictions to use None
Database management system MySQL
Data access File download, Browse
User data submission Not allowed
Maintained Yes


  • person_outline Yongsheng Liu

Publication for Predicted Tomato Interactome Resource

PTIR citations


Structural and functional dissection of differentially expressed tomato WRKY transcripts in host defense response against the vascular wilt pathogen (Fusarium oxysporum f. sp. lycopersici)

PLoS One
PMCID: 5927432
PMID: 29709017
DOI: 10.1371/journal.pone.0193922

[…] nal interaction partner for tomato WRKY proteins that were involved in the molecular mechanism of signaling and metabolic pathways at both cellular and systemic levels was searched and predicted from Predicted Tomato Interactome Resource (PTIR) database [] using comparative protein interactive network suggested for Arabidopsis WRKY33 interacting partners.CATH […]


Design and validation of a foldable and photovoltaic wide field epiretinal prosthesis

Nat Commun
PMCID: 5843635
PMID: 29520006
DOI: 10.1038/s41467-018-03386-7

[…] KPFM characterization was performed in ambient conditions with an Asylum Research Cypher S microscope using PtIr coated tips (AC240TM, Asylum Research, Oxford Instrument) in surface potential imaging mode. To measure the surface potential variation, KPFM images were collected by repetitively scanning a sing […]


Spatial charge inhomogeneity and defect states in topological Dirac semimetal thin films of Na3Bi

Sci Adv
PMCID: 5744468
PMID: 29291249
DOI: 10.1126/sciadv.aao6661

[…] ilms were then grown using a two-step growth method, as reported previously by Hellerstedt et al. () and Edmonds et al. (). The Na3Bi film used in this study had a final growth temperature of 330°C.A PtIr STM tip was prepared and calibrated using an Au(111) single crystal and the Shockley surface state at ~−0.5V and flat LDOS near the Fermi level before all measurements. STM differential conductan […]


Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY–DNA (W Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach

Front Plant Sci
PMCID: 5447077
PMID: 28611792
DOI: 10.3389/fpls.2017.00819

[…] efore, the principle of comparative genomics allowed for the comparative analysis of entire gene regulatory networks across all the eukaryotes (Thompson et al., ). Recently, Yue et al. () developed a Predicted Tomato Interactome Resource (PTIR), based on experimentally determined orthologous interactions in six model organisms including Arabidopsis, nematode worm, fruit fly, human, rice, and yeast […]


Electronically decoupled stacking fault tetrahedra embedded in Au(111) films

Nat Commun
PMCID: 5196436
PMID: 28008910
DOI: 10.1038/ncomms14001

[…] out 20 to 50 mV) at 800 Hz. (dz/dV)(V) spectra and dz/dV maps that also reflect the LDOS are obtained numerically from recorded z(V) spectra. STM data in this work were obtained with mechanically cut PtIr (10% Ir) STM tips, and with polycrystalline W tips that were electrochemically etched and cleaned in situ by thermal treatment. All bias voltages mentioned are with respect to the sample, and the […]


Identified Cellular Correlates of Neocortical Ripple and High Gamma Oscillations during Spindles of Natural Sleep

PMCID: 5130902
PMID: 27746131
DOI: 10.1016/j.neuron.2016.09.032

[…] ylic cement (, ). The chamber was filled with agar and covered with a cup to avoid drying. Reference and grounding electrodes soldered to male 0.05 inch pins (50 μm NiCr formwar insulation and 150 μm PtIr bare wires, respectively) were implanted onto the contralateral hemisphere.Post-surgical recovery was combined with adaptation to the experimental recording situation 4–5 consecutive days followi […]


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PTIR institution(s)
School of Biotechnology and Food Engineering, Hefei University of Technology, Hefei, China; School of Information Science and Technology, University of Science and Technology of China, Hefei, China; Ministry of Education Key Laboratory for Bio-resource and Eco-environment, College of Life Science, State Key Laboratory of Hydraulics and Mountain River Engineering, Sichuan University, Chengdu, China
PTIR funding source(s)
This work was supported by National Natural Science Foundation of China (31171179, 90717110, 31471157 and 31461143008), the National Natural Science Foundation of China for Distinguished Young Scientists (30825030), the National Basic Research Program of China (973 Program) (2011CB100401), Advanced Program of Doctoral Fund of Ministry of Education of China (20110181130009), the China Postdoctoral Science Foundation (2014M561814 and 2014M561815).

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