PTM analysis | Proteomics

Tandem mass spectrometry has become a standard tool for identifying post-translational modifications (PTMs) of proteins. Protein modification is an extremely important post-translational regulation that adjusts the physical and chemical properties, conformation, stability and…

PTM analysis steps

Bioinformatics tools

Databases

Most recent bioinformatics tools

KiPho
Dataset

KiPho

Provides a searchable platform for retrieval of information regarding structure…

Provides a searchable platform for retrieval of information regarding structure similarity, function and published literature about Plasmodium kinases and phosphatases. KiPho is a web resource…

MPTMDB
Dataset

MPTMDB Mining Protein Post-Translational Modifications Database

Gathers information about post-translational modifications (PTMs). MPTMDB is an…

Gathers information about post-translational modifications (PTMs). MPTMDB is an online resource that covers target proteins, enzymes, sites, organisms and human diseases related to PTM. It enables…

MPTM
Web
Desktop

MPTM Mining Protein Post-Translational Modifications

Extracts and organizes comprehensive post-translational modifications (PTMs)…

Extracts and organizes comprehensive post-translational modifications (PTMs) information from literature in PubMed. MPTM provides literature mining service for hydroxylation, myristoylation. It…

MAP Kinase analyser
Desktop

MAP Kinase analyser Mitogen Activated Protein Kinase

Identifies P-Site, phosphorylation site consensus sequences and domain of the…

Identifies P-Site, phosphorylation site consensus sequences and domain of the Mitogen Activated Protein Kinase (MAPK) in plant genome. MAP Kinase analyser can recognize if the given protein sequence…

Most popular analytical software and databases

JASSA
Web

JASSA Joined Advanced Sumoylation Site and Sim Analyser

Uses a scoring system based on a position frequency matrix derived from the…

Uses a scoring system based on a position frequency matrix derived from the alignment of experimental SUMOylation sites or SUMO-interacting motifs (SIMs). Compared to existing web-tools, JASSA…

SwissPalm
Dataset

SwissPalm

A comprehensive, manually curated resource to study protein S-palmitoylation.…

A comprehensive, manually curated resource to study protein S-palmitoylation. SwissPalm currently encompasses more than 5000 S-palmitoylated protein hits from seven species, and contains more than…

KinomeXplorer
Desktop

KinomeXplorer

An integrated framework for modeling kinase-substrate interactions and aid in…

An integrated framework for modeling kinase-substrate interactions and aid in the design of inhibitor-based follow-up perturbation experiments.

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