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PTM analysis | Proteomics

Tandem mass spectrometry has become a standard tool for identifying post-translational modifications (PTMs) of proteins. Protein modification is an extremely important post-translational regulation that adjusts the physical and chemical properties, conformation, stability and…

Analysis steps

Most recent bioinformatics tools

ArMone
Desktop

ArMone

Simplifies the processing of phosphoproteome data. ArMone contains modules…

Simplifies the processing of phosphoproteome data. ArMone contains modules allowing the preprocessing of the mass spectra, the parsing of the search results, the validation of the peptide, and…

CWM Global…
Web

CWM Global Search

Provides a platform allowing the retrieval of chemical structures by submitting…

Provides a platform allowing the retrieval of chemical structures by submitting plain three letter sequences codes. CWM Global Search is a web application able to perform substructures searches as…

PLecDom
Web

PLecDom Plant Lectin Domains

Identifies plants lectins. PlecDom is a web application, based on the gathering…

Identifies plants lectins. PlecDom is a web application, based on the gathering of several profile Hidden Markov Models (HMMs) displayed by sugar-binding domain families, for exploring a given…

MoDL
Desktop

MoDL Motif Description Length

Identifies mixtures of protein phosphorylation motifs. MoDL is based on the…

Identifies mixtures of protein phosphorylation motifs. MoDL is based on the principle of minimum description length (MDL) from information theory. It can create a set of motifs that succinctly…

Most popular analytical software and databases

JASSA
Web

JASSA Joined Advanced Sumoylation Site and Sim Analyser

Uses a scoring system based on a position frequency matrix derived from the…

Uses a scoring system based on a position frequency matrix derived from the alignment of experimental SUMOylation sites or SUMO-interacting motifs (SIMs). Compared to existing web-tools, JASSA…

KinomeXplorer
Desktop

KinomeXplorer

An integrated framework for modeling kinase-substrate interactions and aid in…

An integrated framework for modeling kinase-substrate interactions and aid in the design of inhibitor-based follow-up perturbation experiments.

MetaPredPS
Web

MetaPredPS

The meta-prediction server makes use of element predictors from the following…

The meta-prediction server makes use of element predictors from the following phosphorylation site predicting programs: GPS, KinasePhos, NetPhosK, PPSP, PredPhospho and Scansite.

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