PTM analysis | Proteomics

PTM analysis steps

Bioinformatics tools

Databases

Tandem mass spectrometry has become a standard tool for identifying post-translational modifications (PTMs) of proteins. Protein modification is an extremely important post-translational regulation that adjusts the physical and chemical properties, conformation, stability and…

PTM analysis | Proteomics

Most Recent Tools

PhosPred-RF
Web

PhosPred-RF

Exploits sequential information from multiple perspectives, and yields a set of…

Exploits sequential information from multiple perspectives, and yields a set of discriminative sequential features that are capable to effectively distinguish true phosphorylation sites from…

NetPhosBac
Web

NetPhosBac

Predicts bacteria-specific protein phosphorylation. NetPhosBac was tested on…

Predicts bacteria-specific protein phosphorylation. NetPhosBac was tested on the predictions of phosphorylation sites in E. coli proteins on protein and site-specific levels. It shows the advantage…

NetGlycate
Web

NetGlycate

Predicts glycation of ε amino groups of lysines in mammalian proteins.…

Predicts glycation of ε amino groups of lysines in mammalian proteins. NetGlycate combines 60 artificial neural networks in a balloting procedure. It can be used by researchers to select relevant…

PTMOracle
Desktop

PTMOracle

Allows users to develop systematic searches for proteins of interest and…

Allows users to develop systematic searches for proteins of interest and explore network visualisations that address complex post-translational modifications of proteins (PTM)-associated…

Most Popular Tools

SwissPalm
Dataset

SwissPalm

A comprehensive, manually curated resource to study protein S-palmitoylation.…

A comprehensive, manually curated resource to study protein S-palmitoylation. SwissPalm currently encompasses more than 5000 S-palmitoylated protein hits from seven species, and contains more than…

KinomeXplorer
Desktop

KinomeXplorer

An integrated framework for modeling kinase-substrate interactions and aid in…

An integrated framework for modeling kinase-substrate interactions and aid in the design of inhibitor-based follow-up perturbation experiments.

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