PTM analysis | Proteomics

PTM analysis steps

Bioinformatics tools

Databases

Tandem mass spectrometry has become a standard tool for identifying post-translational modifications (PTMs) of proteins. Protein modification is an extremely important post-translational regulation that adjusts the physical and chemical properties, conformation, stability and…

PTM analysis | Proteomics

Most Recent Tools

Web app
ESA-UbiSite ESA-UbiSite

ESA-UbiSite

Identifies human ubiquitination sites. The main concept of this ESA follows the…

Identifies human ubiquitination sites. The main concept of this ESA follows the principle of natural selection, i.e. survival of the fittest in a changing environment. The identification of putative…

Desktop app
lysine (K)… lysine (K) Acetylation predictor

KA-predictor lysine (K) Acetylation predictor

Predicts species-specific lysine acetylation sites based on support vector…

Predicts species-specific lysine acetylation sites based on support vector machine (SVM) classifier. KA-predictor was designed for four species, H. sapiens, M. musculus, E. coli, and S. typhimurium.…

Desktop app
Integrated… Integrated GlycoProteome Analyzer

I-GPA Integrated GlycoProteome Analyzer

An Integrated GlycoProteome Analyzer including mapping system for complex…

An Integrated GlycoProteome Analyzer including mapping system for complex N-glycoproteomes, which combines methods for tandem mass spectrometry with a database search and algorithmic suite. I-GPA is…

Web app
Malonylation Lysine… Malonylation Lysine residue

Mal-Lys Malonylation Lysine residue

Predicts malonyllysine sites from protein primary sequences. Mal-Lys is a…

Predicts malonyllysine sites from protein primary sequences. Mal-Lys is a predictor which incorporates residue sequence order information, position-specific amino acid propensity and physicochemical…

Most Popular Tools

SwissPalm SwissPalm

SwissPalm

A comprehensive, manually curated resource to study protein S-palmitoylation.…

A comprehensive, manually curated resource to study protein S-palmitoylation. SwissPalm currently encompasses more than 5000 S-palmitoylated protein hits from seven species, and contains more than…

Desktop app
KinomeXplorer KinomeXplorer

KinomeXplorer

An integrated framework for modeling kinase-substrate interactions and aid in…

An integrated framework for modeling kinase-substrate interactions and aid in the design of inhibitor-based follow-up perturbation experiments.

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