PTP specifications

Information


Unique identifier OMICS_01526
Name PTP
Alternative name Poisson Tree Processes
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Phylogenetic trees
Input format Newick, NEXUS
Output data Bootstrap delimitations, Posterial Log likelihood trace file, Bootstrap values of delimited species, Tree plot
Output format txt, png, svg, pdf
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU Affero General Public License version 3
Computer skills Advanced
Stability No
Requirements Python-setuptools, Python-numpy, Python-qt, Python-scipy, Python-mysqldb, Python-lxml, Python-matplotlib, ÉTÉ
Maintained No

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Documentation


Maintainer


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Information


Unique identifier OMICS_01526
Name PTP
Alternative name Poisson Tree Processes
Interface Application programming interface
Restrictions to use None
Input data Only one phylogenetic tree as input
Input format Newick, NEXUS
Output data Species delimitation results
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability No
Maintained No

Download


Documentation


Maintainer


This tool is not available anymore.

Publication for Poisson Tree Processes

PTP institution(s)
The Exelixis Lab, Scientific Computing Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany; Graduate School for Computing in Medicine and Life Sciences, University of Lübeck, Lübeck, Germany; Institut für Neuro- und Bioinformatik, University of Lübeck, Lübeck, Germany; Natural History Museum of Crete, University of Crete, Irakleio, Crete, Greece; Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas-FORTH, Heraklion, Crete, Greece

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