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Public MultiLocus Sequence Typing PubMLST

Hosts multi-locus sequence typing (MLST) data. PubMLST resources are hosted using the Bacterial Isolate Genome Sequence Database (BIGSdb) platform. A RESTful application programming interface (API) makes the curated and structured data on PubMLST accessible for programmatic access. Users may need to authenticate themselves, for instance to submit data for curation. Access to specific data resources can also be limited to registered users or project members.

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PubMLST classification

PubMLST specifications

Restrictions to use:
Data access:
File download, Browse, Application programming interface
Community driven:
User data submission:


  • The Bacterial Isolate Genome Sequence Database (BIGSdb)

PubMLST support


  • Keith Jolley <>


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Department of Zoology, Peter Medawar Building for Pathogen Research, University of Oxford, South Parks Road, Oxford, UK

Funding source(s)

Supported by a Wellcome Trust Biomedical Resource Grant (104992) and the European Community grant FP7-278864-2 (PathoNgenTrace).

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