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PubMed-EX specifications


Unique identifier OMICS_07942
Name PubMed-EX
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 0.3.3
Stability Stable
Maintained Yes


No version available

Publication for PubMed-EX

PubMed-EX citations


Collective Instance Level Gene Normalization on the IGN Corpus

PLoS One
PMCID: 3839972
PMID: 24282506
DOI: 10.1371/journal.pone.0079517

[…] ing-in the ID information for non-human genes, and extend the proposed collective approach to conduct cross species GN. We will also integrate the developed GN system into our online web application, PubMed-EX , and view its potential in processing the large-scale data. […]


CDAPubMed: a browser extension to retrieve EHR based biomedical literature

BMC Med Inform Decis Mak
PMCID: 3366875
PMID: 22480327
DOI: 10.1186/1472-6947-12-29

[…] In recent years, different extensions has been designed for web browsers to provide a mechanism of user and context-based customization for many different computing applications, such as PubMed-EX [] to mark-up gene/disease information in PubMed results. They include new features for Internet navigation, but also for adapting the behavior of web-based systems, such as web search engin […]


PubMed and beyond: a survey of web tools for searching biomedical literature

PMCID: 3025693
PMID: 21245076
DOI: 10.1093/database/baq036

[…] of categorizing search results. Similarly, PubClust was developed on the basis of self-organizing maps () to cluster retrieved abstracts in a hierarchical fashion.PubMed Assistant (), AliBaba () and PubMed-EX () are three non Web-based systems in the PubMed family (disobey selection criterion #1 which requires systems to be Web-based). PubMed assistant belongs to the group of systems for improvin […]


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PubMed-EX institution(s)
Department of Computer Science and Engineering, Yuan Ze University, Chung Li, Taiwan, China

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