PubNet statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

PubNet specifications


Unique identifier OMICS_05248
Name PubNet
Interface Web user interface
Restrictions to use None
Input data PubNet is a utility that accepts as input up to two PubMed queries.
Output data It returns as output a network graph (in multiple image formats) based on user-specified node and edge selection properties.
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Mark Gerstein <>

Publication for PubNet

PubNet in publications

PMCID: 3017106
PMID: 21253560
DOI: 10.1371/journal.pcbi.1002001

[…] of citations per year, average number of citations per article, and so on. however, these are only for publications found in isi databases, which can be limited for a multidisciplinary researcher. pubnet will provide your collaborative network from pubmed where each node on the network is a researcher you have published with and the thickness of edges reflects the number of times […]


RNAi Development

PMCID: 1857818
PMID: 17465677
DOI: 10.1371/journal.pcbi.0030080

[…] literature databases. in particular, in the figure we show the results for searching pubmed for the term “rna interference” in each of the years from 1998 to 2003. (this was done with a tool called pubnet that allows one to visualize the networks generated by arbitrary queries against the national center for biotechnology institute's pubmed database [].) the top subgraph simply shows […]

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PubNet institution(s)
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA

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