PubNet statistics

Citations per year

Tool usage distribution map

Associated diseases

Popular tool citations

Relation discovery

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PubNet specifications

Web

Information

Unique identifier	OMICS_05248
Name	PubNet
Interface	Web user interface
Restrictions to use	None
Input data	PubNet is a utility that accepts as input up to two PubMed queries.
Output data	It returns as output a network graph (in multiple image formats) based on user-specified node and edge selection properties.
Computer skills	Basic
Stability	Stable
Maintained	Yes

Maintainer

Mark Gerstein

Publication for PubNet

PubNet: a flexible system for visualizing literature derived networks.

2005 Genome Biol

PMCID: 1242215

PMID: 16168087

DOI: 10.1186/gb-2005-6-9-r80

PubNet citations

(3)

PALM IST: Pathway Assembly from Literature Mining an Information Search Tool

2015

Sci Rep

PMCID: 4437304

PMID: 25989388

DOI: 10.1038/srep10021

[…] s search based association and the CTD enlisted disease- gene/drugs/pathway association.The co-authorship network and network derived features were verified against published networks provided in the PubNet server. PubNet co-author networks were re-created by the PALM-IST using the same query keywords/author based searches (). Further, the networks and their features were compared ( in supplementa […]

PubMed and beyond: a survey of web tools for searching biomedical literature

2011

PMCID: 3025693

PMID: 21245076

DOI: 10.1093/database/baq036

[…] abstract sentences. For example, a semantic search such as ‘what causes colon cancer?’ will require the output sentences to match ‘cause’ and ‘colon cancer’ as the event verb and object, respectively.PubNet () stands for Publication Network Graph Utility. It parses the XML output of standard PubMed queries and creates different kinds of networks depending on the type of nodes and edges a user sele […]

Linking genes to literature: text mining, information extraction, and retrieval applications for biology

2008

Genome Biol

PMCID: 2559992

PMID: 18834499

DOI: 10.1186/gb-2008-9-s2-s8

[…] ovelty of publications []. The biomedical literature can also serve as a resource to build social networks of research collaborations using co-author citation analysis. Web-based applications such as PubNet are able to provide a graphical visualization of co-author networks derived from citations []. […]

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