PubServer specifications


Unique identifier OMICS_18183
Name PubServer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA
Output data A list of collected publications, a list of proteins.
Computer skills Advanced
Stability Stable
Maintained No


No version available


This tool is not available anymore.

Publication for PubServer

PubServer citation


Comprehensive classification of the PIN domain like superfamily

Nucleic Acids Res
PMCID: 5499597
PMID: 28575517
DOI: 10.1093/nar/gkx494

[…] ff of 10−5. Taxonomic lineages of organisms were assigned according to the NCBI Taxonomy database (). Transmembrane helices were predicted with TMHMM 2.0 (). Literature references were searched using PubServer (). Annotations of the final NR sequences can be found in .To visualize protein sequence similarities in 2D space, the representatives of sequence clusters at the 80% identity level were sub […]

PubServer institution(s)
Joint Center for Structural Genomics; Bioinformatics and Systems Biology Program, Sanford Burnham Medical Research Institute, La Jolla, CA, USA; Center for Research in Biological Systems, University of California, San Diego, La Jolla, CA, USA
PubServer funding source(s)
Supported by National Institute of General Medical Sciences of the National Institutes of Health (NIH) [U54 GM094586].

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