Provides a platform for single nucleotide polymorphisms (SNPs) selection and visualization. PupasView is a web application that aims to help users in getting an optimal set of SNPs for genotyping experiments by filtering a precompiled database of annotated SNPs. The application provides several filters authorizing to fit the desired outputs according to their protein functionality and pathology, population frequency and linkage disequilibrium (LD).
Bioinformatics Unit, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, Spain; Molecular Modelling and Bioinformatics Unit, Institut de Recerca Biomedica; Structure and Modelling Node INB, Parc Cientıfic de Barcelona, Barcelona, Spain; Institucio Catalana per la Recerca i Estudis Avancats (ICREA), Barcelona, Spain; Departament de Bioquımica i Biologia Molecular Facultat de Quimica, Universitat de Barcelona, Barcelona, Spain; Functional Genomics Node, National Institute of Bioinformatics (INB), CIPF Valencia, Spain
PupasView funding source(s)
Supported by grant PI020919 from the FIS, the FPU fellowship programme from the MEC, by a grant from the Fundacio La Caixa and the Fundacion Ramon Areces.