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Tool usage distribution map

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Associated diseases

Associated diseases

PupasView specifications

Information


Unique identifier OMICS_24026
Name PupasView
Interface Web user interface
Restrictions to use None
Input data A gene identifier.
Computer skills Basic
Maintained No

Maintainer


This tool is not available anymore.

Publication for PupasView

PupasView in publications

 (4)
PMCID: 3326031
PMID: 22529920
DOI: 10.1371/journal.pone.0034573

[…] transcription factor binding sites, exonic splice enhancer sites, exonic splice silencer sites, triplet formation sites or intron-exon boundaries. pupasuite combines the functionality of pupasnp and pupasview in a unique and more integrated interface, and adds new modules to facilitate the selection of the optimal set of snps for a large-scale genotyping studies., we considered multiple ways […]

PMCID: 3361463
PMID: 22423892
DOI: 10.1186/1423-0127-19-30

[…] and coding snps, as well as annotations for the swissprot set of human disease mutations. pupasuite finds all the snps mapping in locations that might cause a loss of functionality in the genes. pupasview [] retrieves snps that could affect conserved regions that the cellular machinery uses for the correct processing of genes (intron/exon boundaries or exonic splicing enhancers)., 5' and 3' […]

PMCID: 2780456
PMID: 19903360
DOI: 10.1186/1471-2407-9-394

[…] informed consent., abbreviations: dcis = ductal carcinoma in situ; er = estrogen receptor; idc = infiltrative ductal carcinoma; ln = lymph node; pr = progesterone receptor; tz = tumor size., using pupasview software [], we found that rs10754339 in 3'-utr, and rs3738414 in 5'-utr are located on exonic splicing enhancers (eses), which may influence splicing of the primary transcript […]

PMCID: 2682794
PMID: 19389263
DOI: 10.1186/1423-0127-16-42

[…] now synchronized to deliver annotations for both non-coding and coding snp, as well as annotations for the swissprot set of human disease mutations. it is an integrated interface of pupasnp [] and pupasview [] for selecting snps with potential phenotypic effect accessible via and through . in this approach, the input consists of a list of genes (genes belonging to a given pathway, involved […]


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PupasView institution(s)
Bioinformatics Unit, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, Spain; Molecular Modelling and Bioinformatics Unit, Institut de Recerca Biomedica; Structure and Modelling Node INB, Parc Cientıfic de Barcelona, Barcelona, Spain; Institucio Catalana per la Recerca i Estudis Avancats (ICREA), Barcelona, Spain; Departament de Bioquımica i Biologia Molecular Facultat de Quimica, Universitat de Barcelona, Barcelona, Spain; Functional Genomics Node, National Institute of Bioinformatics (INB), CIPF Valencia, Spain
PupasView funding source(s)
Supported by grant PI020919 from the FIS, the FPU fellowship programme from the MEC, by a grant from the Fundacio La Caixa and the Fundacion Ramon Areces.

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