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PupasView specifications


Unique identifier OMICS_24026
Name PupasView
Interface Web user interface
Restrictions to use None
Input data A gene identifier.
Computer skills Basic
Maintained No


This tool is not available anymore.

Publication for PupasView

PupasView citations


Computational Refinement of Functional Single Nucleotide Polymorphisms Associated with ATM Gene

PLoS One
PMCID: 3326031
PMID: 22529920
DOI: 10.1371/journal.pone.0034573

[…] transcription factor binding sites, exonic splice enhancer sites, exonic splice silencer sites, triplet formation sites or intron-exon boundaries. PupaSuite combines the functionality of PupaSNP and PupasView in a unique and more integrated interface, and adds new modules to facilitate the selection of the optimal set of SNPs for a large-scale genotyping studies. […]


In Silico profiling of deleterious amino acid substitutions of potential pathological importance in haemophlia A and haemophlia B

J Biomed Sci
PMCID: 3361463
PMID: 22423892
DOI: 10.1186/1423-0127-19-30

[…] ding and coding SNPs, as well as annotations for the SwissProt set of human disease mutations. PupaSuite finds all the SNPs mapping in locations that might cause a loss of functionality in the genes. PupasView [] retrieves SNPs that could affect conserved regions that the cellular machinery uses for the correct processing of genes (intron/exon boundaries or exonic splicing enhancers). […]


B7 H4 gene polymorphisms are associated with sporadic breast cancer in a Chinese Han population

BMC Cancer
PMCID: 2780456
PMID: 19903360
DOI: 10.1186/1471-2407-9-394

[…] Using Pupasview software [], we found that rs10754339 in 3'-UTR, and rs3738414 in 5'-UTR are located on exonic splicing enhancers (ESEs), which may influence splicing of the primary transcript with producti […]


Investigation on the role of nsSNPs in HNPCC genes – a bioinformatics approach

J Biomed Sci
PMCID: 2682794
PMID: 19389263
DOI: 10.1186/1423-0127-16-42

[…] re now synchronized to deliver annotations for both non-coding and coding SNP, as well as annotations for the SwissProt set of human disease mutations. It is an integrated interface of PupaSNP [] and PupasView [] for selecting SNPs with potential phenotypic effect accessible via and through . In this approach, the input consists of a list of genes (genes belonging to a given pathway, involved in […]


Joint annotation of coding and non coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases

Nucleic Acids Res
PMCID: 2238831
PMID: 18086700
DOI: 10.1093/nar/gkm979

[…] f these levels: PupaSuite () and SNPeffect (,).PupaSuite is a web tool for selecting SNPs with potential phenotypic effect and was originally based on the combined functionality of the PupaSNP () and PupasView () web tools. Since its release in 2006, PupaSuite was extended with new tools for predicting silencers and enhancers, new conservation measures and predictions on mouse and rat genomes. SNP […]

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PupasView institution(s)
Bioinformatics Unit, Centro Nacional de Investigaciones Oncologicas (CNIO), Madrid, Spain; Molecular Modelling and Bioinformatics Unit, Institut de Recerca Biomedica; Structure and Modelling Node INB, Parc Cientıfic de Barcelona, Barcelona, Spain; Institucio Catalana per la Recerca i Estudis Avancats (ICREA), Barcelona, Spain; Departament de Bioquımica i Biologia Molecular Facultat de Quimica, Universitat de Barcelona, Barcelona, Spain; Functional Genomics Node, National Institute of Bioinformatics (INB), CIPF Valencia, Spain
PupasView funding source(s)
Supported by grant PI020919 from the FIS, the FPU fellowship programme from the MEC, by a grant from the Fundacio La Caixa and the Fundacion Ramon Areces.

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