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Pupylation site prediction software tools | Post-translational modification analysis

As one important post-translational modification of prokaryotic proteins, pupylation plays a key role in regulating various biological processes. The accurate identification of pupylation sites is crucial for understanding the underlying mechanisms…
IMP–PUP
Desktop

IMP–PUP

A bioinformatics tool for accurate prediction of pupylation sites. IMP–PUP is…

A bioinformatics tool for accurate prediction of pupylation sites. IMP–PUP is constructed on the composition of k-spaced amino acid pairs and trained with a modified semi-supervised self-training…

PUL-PUP
Desktop

PUL-PUP PU learning for pupylation sites prediction

Predicts pupylation sites by using positive-unlabeled learning technique. Our…

Predicts pupylation sites by using positive-unlabeled learning technique. Our experimental results indicated that PUL-PUP outperforms the other methods significantly for the prediction of pupylation…

pbPUP
Web

pbPUP profile-based PUpylation site Predictor

A computational tool to predict pupylation sites based on protein sequence…

A computational tool to predict pupylation sites based on protein sequence information. In particular, a sophisticated sequence encoding scheme [i.e. the profile-based composition of k-spaced amino…

PupPred
Web

PupPred Pupylation Predictor

Identifies candidate pupylation sites based on the local sequence information.…

Identifies candidate pupylation sites based on the local sequence information. Although the number of experimentally determined pupylation sites will be growing in the future and these sites will be…

GPS-PUP
Desktop

GPS-PUP

Serves as a powerful tool to help identify pupylation sites in prokaryotic…

Serves as a powerful tool to help identify pupylation sites in prokaryotic proteins. The large-scale prediction and functional analysis results can be used for the further investigation of molecular…

iPUP
Web
Desktop

iPUP

A sequence-based prediction method capable of predicting pupylation sites with…

A sequence-based prediction method capable of predicting pupylation sites with probability scores for prioritizing promising pupylation sites. The iPUP is constructed by using SVM, CKSAAP and the…

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