PurityEst statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

PurityEst specifications

Information


Unique identifier OMICS_03560
Name PurityEst
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format GFF
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Xiaoping Su <>

Publication for PurityEst

PurityEst in publication

PMCID: 4563570
PMID: 26350498
DOI: 10.1038/srep13955

[…] estimate. in contrast, bacom2.0 adopted a divide-and-conquer strategy by sequentially performing absolute normalization, purity estimation, copy number quantification, and average-ploidy estimation. purityest proposed by su et al. estimates normal cell fraction using single-nucleotide variants but not original sequence reads. the formulation does not explicitly consider effects of copy number […]


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PurityEst institution(s)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Department of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
PurityEst funding source(s)
Supported by National Cancer Institute (U24CA143883, in part); National Center for Research Resources (3UL1RR024148 and ULTR000371, in part and a grant in part from the H.A. and Mary K. Chapman Foundation and the Michael & Susan Dell Foundation).

PurityEst review

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Calvi. C.

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Great, works.