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PvGEA specifications

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Unique identifier OMICS_05877
Name PvGEA
Alternative name Phaseolus vulgaris Gene Expression Atlas
Restrictions to use None
Maintained Yes

Publication for Phaseolus vulgaris Gene Expression Atlas

PvGEA citations

 (3)
library_books

Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

2017
BMC Plant Biol
PMCID: 5445279
PMID: 28545577
DOI: 10.1186/s12870-017-1037-z

[…] roach yielded an average of 41,746 transcripts across all biological replicates. The original estimation of protein coding loci in P. vulgaris was 27,197 [], whereas 31,638 genes are projected in the Phaseolus vulgaris Gene Expression Atlas []. Gene counts for all seed coat libraries were normalized in Cuffnorm, yielding an average of 27,751 genes. Transcript levels (expressed as fragments per kil […]

call_split

Genome wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues of Arabidopsis thaliana

2015
J Exp Bot
PMCID: 4526924
PMID: 26188205
DOI: 10.1093/jxb/erv351
call_split See protocol

[…] bean RNA-Seq Atlas (http://www.soybase.org/soyseq/; ); the Soybean eFP Browser (http://bar.utoronto.ca/efpsoybean/cgi-bin/efpWeb.cgi; ); A Common Bean Gene Expression Atlas (http://plantgrn.noble.org/PvGEA/index.jsp; ); and the Arabidopsis eFP Browser (http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi; ). The entire list of gene identifiers for each species was searched in their respective databases, […]

library_books

Functional interplay between glutathione and hydrogen sulfide in regulation of thiol cascade during arsenate tolerance of common bean (Phaseolus vulgaris L.) genotypes

2015
3 Biotech
PMCID: 4569614
PMID: 28324537
DOI: 10.1007/s13205-015-0285-6

[…] genes were constructed by Primer Express™ V. 3.0 software (Applied Biosystems, USA) with the search of available sequence databases (http://www.phytozome.net/commonbean.php; http://plantgrn.noble.org/PvGEA/) and reports on Phaseolus vulgaris (Liao et al. ; Talukdar and Talukdar ) and were presented in Table . The qRT-PCR cycling stages comprised of initial denaturation step at 94 °C (3 min), follo […]


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PvGEA institution(s)
Department of Agronomy and Plant Genetics, University of Minnesota, St, Paul, MN, USA

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