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PvGEA specifications


Unique identifier OMICS_05877
Name PvGEA
Alternative name Phaseolus vulgaris Gene Expression Atlas
Restrictions to use None
Maintained Yes

Publication for Phaseolus vulgaris Gene Expression Atlas

PvGEA citations


Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening

BMC Plant Biol
PMCID: 5445279
PMID: 28545577
DOI: 10.1186/s12870-017-1037-z

[…] roach yielded an average of 41,746 transcripts across all biological replicates. The original estimation of protein coding loci in P. vulgaris was 27,197 [], whereas 31,638 genes are projected in the Phaseolus vulgaris Gene Expression Atlas []. Gene counts for all seed coat libraries were normalized in Cuffnorm, yielding an average of 27,751 genes. Transcript levels (expressed as fragments per kil […]


Genome wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues of Arabidopsis thaliana

J Exp Bot
PMCID: 4526924
PMID: 26188205
DOI: 10.1093/jxb/erv351
call_split See protocol

[…] bean RNA-Seq Atlas (http://www.soybase.org/soyseq/; ); the Soybean eFP Browser (http://bar.utoronto.ca/efpsoybean/cgi-bin/efpWeb.cgi; ); A Common Bean Gene Expression Atlas (http://plantgrn.noble.org/PvGEA/index.jsp; ); and the Arabidopsis eFP Browser (http://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi; ). The entire list of gene identifiers for each species was searched in their respective databases, […]


Functional interplay between glutathione and hydrogen sulfide in regulation of thiol cascade during arsenate tolerance of common bean (Phaseolus vulgaris L.) genotypes

3 Biotech
PMCID: 4569614
PMID: 28324537
DOI: 10.1007/s13205-015-0285-6

[…] genes were constructed by Primer Express™ V. 3.0 software (Applied Biosystems, USA) with the search of available sequence databases (http://www.phytozome.net/commonbean.php; http://plantgrn.noble.org/PvGEA/) and reports on Phaseolus vulgaris (Liao et al. ; Talukdar and Talukdar ) and were presented in Table . The qRT-PCR cycling stages comprised of initial denaturation step at 94 °C (3 min), follo […]

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PvGEA institution(s)
Department of Agronomy and Plant Genetics, University of Minnesota, St, Paul, MN, USA

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