pwOmics specifications

Information


Unique identifier OMICS_12508
Name pwOmics
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.12.0
Stability Stable
Requirements
AnnotationDbi, stats, gplots, graphics, BiocGenerics, Biobase, GenomicRanges, utils, grDevices, biomaRt, data.table, graph, R(>=3.2), AnnotationHub, igraph, STRINGdb, Mfuzz, rBiopaxParser, ebdbNet, longitudinal
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Astrid Wachter

Publications for pwOmics

pwOmics citation

library_books

Genomic, Proteomic, and Metabolomic Data Integration Strategies

2015
PMCID: 4562606
PMID: 26396492
DOI: 10.4137/BMI.S29511

[…] an be used to integrate or map multiple omic experimental results and help identify altered graph neighborhoods, which do not depend on any predefined biochemical pathways. For example, SAMNetWeb and pwOmics support integration of transcriptomic, proteomic, and interactomic data for biological network computation, visualization and functional enrichment analysis. Metscape, a plug-in for the widely […]

pwOmics institution(s)
Department of Medical Statistics, Georg-August-University Göttingen, Germany
pwOmics funding source(s)
This work was supported by the German Federal Ministry of Education and Research via the projects MetastaSys [0316173A] and the MMML-Demonstrators [031A428B].

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