PyCogent specifications

Information


Unique identifier OMICS_14006
Name PyCogent
Alternative names PYthon Comparative GENomic Toolkit, Cogent
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.9
Stability Stable
Requirements Numpy, zlib, C compiler, Matploblib, Cython, mpi4py, SQLAlchemy
Maintained Yes

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Maintainer


  • person_outline Rob Knight <>

Publication for PYthon Comparative GENomic Toolkit

PyCogent institution(s)
Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO, USA; Computational Genomics Laboratory, John Curtin School of Medical Research, The Australian National University, Canberra, Australia; Thermo Fisher Scientific, Lafayette, CO, USA; Seattle Biomedical Research Institute, Seattle, WA, USA; Department of Biochemistry and Molecular Genetics, University of Colorado Health Sciences Center, Aurora, CO, USA; Science Applications International Corporation, Englewood, CO, USA; Department of Computer Science, University of Colorado, Boulder, CO, USA; Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA; Walter and Eliza Hall Institute, Melbourne, Australia
PyCogent funding source(s)
This tool was funded by the Australian Partnership for Advanced Computing, Cray Australia Pty. Ltd., the Australian Research Council, the National Health and Medical Research Council, the Keck RNA Bioinformatics Initiative, Jane and Charlie Butcher Foundation, NIH Signaling and Cellular Regulation Training Grant, NIH Biophysics Training Grant, the National Academy Keck Futures Initiative

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