pyCRAC pipeline

pyCRAC specifications


Unique identifier OMICS_19144
Name pyCRAC
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Sander Granneman <>

Publication for pyCRAC

pyCRAC citation

PMCID: 4487409

[…] and sequenced on an illumina hiseq 2500 instrument., fastq files were adapter trimmed using flexbar29 and demultiplexed based on their experimental barcode using the script of the pycrac tool suite30. the second part of the iclip random barcode was then moved to the read headers with the unix tool awk (awk -f “##” ‘{sub(/..../, “##”$2, $2); getline($3); $4 = substr($3,1,2); $5 […]

pyCRAC institution(s)
Centre for Synthetic and Systems Biology (SynthSys), Kings Buildings, Edinburgh, UK; Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, UK; MRC Human Genetics Unit, University of Edinburgh, Western General Hospital, Crewe Road, Edinburgh, UK
pyCRAC funding source(s)
Supported by Wellcome Trust Research and Career Development Grants (097383, 091549), the Medical Research Council and the Wellcome Trust Centre for Cell Biology core grant (092076).

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