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PyElph specifications
Information
| Unique identifier | OMICS_08260 |
|---|---|
| Name | PyElph |
| Software type | Package/Module |
| Interface | Graphical user interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | Python |
| License | GNU General Public License version 2.0 |
| Computer skills | Medium |
| Stability | Stable |
| Requirements |
Numpy, PIL, wxPython, Matplotlib
|
| Maintained | Yes |
Versioning
No version available
Documentation
Maintainer
- person_outline Ana Brânduşa Pavel
Publication for PyElph
PyElph citations
(13)Estimating Genetic Conformism of South Korean Mulberry Cultivars Using Random Amplified Polymorphic DNA and Inter Simple Sequence Repeat Profiling
[…] ster analysis []. Next, this similarity matrix was used to construct the phylogenetic tree through UPGMA (Unweighted Pair Group Method with Arithmetic Mean) method with a distance tool using the free PyElph 1.4 computer software [,,]. The robustness of the dendrogram was further checked by the cophenetic correlation coefficient. The cophenetic correlation coefficient was calculated using the origi […]
Temporal variations in patterns of Escherichia coli strain diversity and antimicrobial resistance in the migrant Egyptian vulture
[…] llowing sequential steps: DNA was extracted, checked for purity, integrity and ribotyped by published protocols [–].Subsequently, the polyacrylamide gel electrophoresis (PAGE) images were analysed by PyElph software []. Bands across the lanes were matched based on position and number of bands, and a binary matrix, designating presence of band as ‘1’ and absence as ‘0’, was made using the software. […]
Occurrence of blaNDM Variants Among Enterobacteriaceae From a Neonatal Intensive Care Unit in a Northern India Hospital
[…] TCCTGGGGATTAAC-3′) and ERIC-Reverse (5′AAGTAAGGACTGGGGTGAGCG-3′), was performed as described earlier (Versalovic et al., ). Bio-Red Gel Doc system was used to scan gel image and analyzed the bands by PyElph version 1.4 Software to generate a dendrogram by the un weighted pair group method using arithmetic averages (UPGMA) clustering (PyElph) (Pavel and Vasile, ). […]
Prevalence of CTX M and TEM β lactamases in Klebsiella pneumoniae Isolates from Patients with Urinary Tract Infection, Al Zahra Hospital, Isfahan, Iran
[…] malize positions of the bands on the different lanes and gels. The existence of a given band was coded as 1 and the lack of a given band was coded as 0 in an information matrix and analyzed using the PyElph 1.4 software (BMC Bioinformatics U.S). Dendrograms of differences were set up for each case. […]
Deleterious Metabolic Effects of High Fructose Intake: The Preventive Effect of Lactobacillus kefiri Administration
[…] d 0.01 μL/mL (Invitrogen, Life Technologies, Carlsbad, CA, USA) in TAE 1X buffer and visualized in a Bio-Rad Universal Hood II gel documentation system (Bio-Rad laboratories Inc., Hercules, CA, USA). PyElph 1.4 software was used to calculate the dendrograms using the UPGMA (unweighted pair group method with arithmetic mean clustering algorithm) []. […]
Detection of a CTX M group 2 beta lactamase gene in a Klebsiella pneumoniae isolate from a tertiary care hospital, Trinidad and Tobago
[…] se it gave the best banding pattern. RAPD typing was then performed using selected isolates (Additional file ). The resulting gel was photographed under UV light. RAPD fingerprints were analysed with PyElph version 1.4 gel analysis software [], and a dendrogram generated using the unweighted pair group method with arithmetic averages (UPGMA). […]
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