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Pygr specifications

Information


Unique identifier OMICS_13867
Name Pygr
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 0.8.2
Stability Stable
Maintained Yes

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Publication for Pygr

Pygr in publication

PMCID: 2784930
PMID: 20019791
DOI: 10.1371/journal.pcbi.1000608

[…] within the same transcript isoform. here we briefly summarize each step (see ): 1) each exon was mapped to orthologous exons in the 28 aligned genomes using the nlmsa alignment query tool in the pygr software package (http://code.google.com/p/pygr/). 2) each orthologous exon was required to retain the aligned splice sites and maintain a minimum of 70% amino acid identity (calculated […]


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Pygr institution(s)
Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA; Molecular Biology Institute, Center for Computational Biology, Institute for Genomics and Proteomics, Department of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, CA, USA
Pygr funding source(s)
This work was supported by UCLA-IGERT bioinformatics traineeship (NSF DGE-998764), the NIH under Ruth L. Kirschstein National Research Service Award (GM008185) from the National Institute of General Medical Sciences, the National Institutes of Health Grant (U54-RR021813) and Department of Energy Grant (DE-FC02-02ER63421).

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