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Pyicoenrich specifications

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Unique identifier OMICS_15234
Name Pyicoenrich
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Experiment files in reads format.
Input format BED, SAM, BAM, ELAND
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Pyicoenrich citation

library_books

A semi supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells

2015
BMC Genomics
PMCID: 4501197
PMID: 26169177
DOI: 10.1186/s12864-015-1704-0

[…] the proportion of g + c in the 1500 nt window. after normalization, the z-score of the relative enrichment of each chip-seq signals between k562 and gm12878 was calculated with pyicoteo [] using the pyicoenrich function (https://bitbucket.org/regulatorygenomicsupf/pyicoteo). a vector of z-scores per region was obtained, which we refer to as attributes, consisting of the 17 enrichment z-scores […]


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