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|Interface||Command line interface|
|Restrictions to use||None|
|License||GNU Lesser General Public License version 3.0|
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- person_outline Padraig Gleeson
Publication for pyLEMS
Modeling Behavioral Experiment Interaction and Environmental Stimuli for a Synthetic C. elegans
[…] li modeling approach and its implementation presented in this paper may provide stimuli input for C. elegans behavioral experiments for various neuronal simulation systems, such as jLems (jLEMS, ) or pyLEMS (Vella et al., ).The work has been focused only on the natural input that the neurons will receive during the simulation and not in the processes that convert such input into neural activation. […]
Improving Collaboration by Standardization Efforts in Systems Biology
[…] n et al., ), which hierarchically defines structure and dynamics of a large variety of biological models. For parsing, writing, and manipulating NeuroML and LEMS files, the Python APIs libNeuroML and PyLEMS as well as the Java™ APIs jNeuroML and jLEMS are available (Vella et al., ). The original idea to link sub-modules of processes in NeuroML to models encoded in SBML or CellML (Gleeson et al., ) […]
libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience
[…] are passed every time a change is applied to the software and pushed to GitHub. Test coverage is 91% [measured with the Python Coverage module version 3.7.1 (https://pypi.python.org/pypi/coverage)]. PyLEMS is also developed on GitHub and released as part of NeuroML release cycle. Basic unit testing and continuous integration on Travis-CI have been added to PyLEMS and will be expanded in the futur […]
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