PyMAP statistics

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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PyMAP specifications

Information


Unique identifier OMICS_12943
Name PyMAP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Amin Mahpour <>

Publication for PyMAP

PyMAP in publications

 (2)
PMCID: 4469577
PMID: 26003111
DOI: 10.1186/s13059-015-0678-1

[…] of a framework of ssr markers from the existing linkage map [] and previously published chromosome naming systems []. to validate the linkage map, an independent program, checkmatrix using pymap bit and rec scores, as described by kozik [], was utilized. the recombination bin map was used to anchor scaffolds and calculate recombination rates., each scaffold within the snp linkage map […]

PMCID: 3306302
PMID: 22439001
DOI: 10.1371/journal.pone.0033821

[…] errors and uncertainties caused by missing values and sequence duplication, the qualities of the final maps were carefully addressed and validated by an independent program checkmatrix using pymap bit and rec scores as described by kozik (http://www.atgc.org/xlinkage/). any markers that were detected as having weak linkage positions were remapped by adjusting joinmap parameters, […]


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PyMAP institution(s)
Cancer Genetics Department, Roswell Park Cancer Institute, Buffalo, NY, USA

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