A native python module for analysis of 450k methylation platform. PyMAP can be easily deployed to cloud platforms that support python scripting language for large-scale methylation studies. By implementing fast parsing functionality, this module can be used to analyze large-scale methylation datasets. Additionally, command-line executables shipped with the module can be used to perform common analysis tasks on personal computers.

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PyMAP classification

PyMAP specifications

Software type:
Package
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
Python
Stability:
Stable

Publications

  • (Mahpour et al., 2016) pyMAP: a Python package for small and large scale analysis of Illumina 450k methylation platform. bioRxiv.
    DOI: 10.1101/078048

PyMAP support

Maintainer

Credits

Institution(s)

Cancer Genetics Department, Roswell Park Cancer Institute, Buffalo, NY, USA

Link to literature

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