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- Software type:
- Restrictions to use:
- Programming languages:
- Command line interface
- Operating system:
- Unix/Linux, Mac OS, Windows
- Computer skills:
- Python, Argparse Numpy, Scipy libraries
- Documentation: https://github.com/dsilvestro/PyRate/wiki
- Daniele Silvestro <daniele.silvestro at unil.ch>
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- (Silvestro D et al., 2014) Bayesian estimation of speciation and extinction from incomplete fossil occurrence data. Syst Biol. PMID: 24510972 DOI: 10.1093/sysbio/syu006
(Silvestro D, 2014)
PyRate: A new program to estimate speciation and extinction rates from incomplete fossil record.
Methods Ecol Evol.
Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland; Swiss Institute of Bioinformatics, Lausanne, Switzerland; Department of Plant and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden; Biodiversity and Climate Research Centre & Senckenberg Research Institute, Frankfurt am Main, Germany; Department of Biological Sciences, Goethe University, Frankfurt am Main, Germany; Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Oslo, Norway; Gothenburg Botanical Garden, Gothenburg, Sweden
This project was funded from the German Academic Exchange Service, the University of Lausanne, the Wenner-Gren Foundation, the LOEWE program of Hesse’s Ministry of Higher Education Research and the Arts, the Swedish Research Council (B0569601), the European Research Council under the European Unions Seventh Framework Programme (FP/2007-2013, ERC Grant Agreement No. 331024), the grants PDFMP3_134931 and 3100A0_138282 from the Swiss National Science Foundation.