Pyrocleaner pipeline

Pyrocleaner specifications


Unique identifier OMICS_01069
Name Pyrocleaner
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The list of files to clean or the single file to clean.
Input format SFF,FASTQ,FASTA
Output format SFF,FASTQ,FASTA
Biological technology Roche
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Jérôme Mariette <>

Publication for Pyrocleaner

Pyrocleaner IN pipeline

PMCID: 4046650
PMID: 24261852
DOI: 10.1186/1471-2164-14-814

[…] full bac sequencing was performed using 454 multiplexing technology on a gs-flx titanium sequencer (454 life sciences, roche diagnostics, branford, connecticut, usa). raw reads were cleaned using pyrocleaner [90]. reads sharing more than 95% homology with bac vector or escherichia coli genome sequence were excluded. de novo assembly of the cleaned reads was performed using newbler (version […]

Pyrocleaner institution(s)
Plate-forme bio-informatique Genotoul, INRA, Biométrie et Intelligence Artificielle/Génétique Cellulaire, France

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