PyroHMMsnp statistics

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PyroHMMsnp specifications


Unique identifier OMICS_02617
Name PyroHMMsnp
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Input data Some raw mappings generated by programs, such as MegaBlast, SSAHA2 (27), Burrows-Wheeler Aligner with SmithWaterman algorithm (BWA-SW), Roche’s GSmapper and Ion Torrent’s TMAP.
Biological technology Roche
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes



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Publication for PyroHMMsnp

PyroHMMsnp in publication

PMCID: 5001236
PMID: 27556417
DOI: 10.1186/s12864-016-2894-9

[…] limits the further application with other alignment programs. in addition, the parameter selection in the algorithm is ad hoc, and was not designed for maximizing the performance. zeng designed a pyrohmmsnp algorithm, where a hidden markov model (hmm) is built to recognize overcall or undercall status of homopolymers in a realignment process, and is used to deduce the most possible […]

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PyroHMMsnp institution(s)
Bioinformatics Division, TNLIST/Department of Automation, Tsinghua University, Beijing, China

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