PyroHMMsnp statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left SNP detection chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

PyroHMMsnp specifications

Information


Unique identifier OMICS_02617
Name PyroHMMsnp
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Input data Some raw mappings generated by programs, such as MegaBlast, SSAHA2 (27), Burrows-Wheeler Aligner with SmithWaterman algorithm (BWA-SW), Roche’s GSmapper and Ion Torrent’s TMAP.
Biological technology Roche
Operating system Unix/Linux
License MIT License
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Publication for PyroHMMsnp

PyroHMMsnp in publication

PMCID: 5001236
PMID: 27556417
DOI: 10.1186/s12864-016-2894-9

[…] limits the further application with other alignment programs. in addition, the parameter selection in the algorithm is ad hoc, and was not designed for maximizing the performance. zeng designed a pyrohmmsnp algorithm, where a hidden markov model (hmm) is built to recognize overcall or undercall status of homopolymers in a realignment process, and is used to deduce the most possible […]


To access a full list of publications, you will need to upgrade to our premium service.

PyroHMMsnp institution(s)
Bioinformatics Division, TNLIST/Department of Automation, Tsinghua University, Beijing, China

PyroHMMsnp reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PyroHMMsnp