PyroNoise specifications

Information


Unique identifier OMICS_08901
Name PyroNoise
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Biological technology Roche
Operating system Unix/Linux
Parallelization MPI
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Chris Quince <>

PyroNoise article

PyroNoise citations

 (2)
2017
PMCID: 5488102

[…] following manufacturer’s guidelines. sequencing raw data were processed using mothur v.1.33.0 [20]. the flowgrams of each sample were distinguished according to their tag and were denoised with the pyronoise software [21]. after removing primer sequences, tag, and key fragments, only sequences with ≥200 bp having homopolymers <8 bp were kept for further analysis. chimeras were recognised […]

2014
PMCID: 3896389

[…] operating procedure [37]. specially, sequences having a minimum flow length of 360 flows and a maximum flow length of 450 flows were de-noised using the mothur based re-implementation of the pyronoise algorithm [38] with the default parameters. de-noised sequences with more than two mismatches to the forward primer sequence, one mismatch to the barcode sequence, containing a homopolymer […]

PyroNoise institution(s)
Department of Civil Engineering, Rankine Building, University of Glasgow, Glasgow, UK

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