PyroNoise pipeline

PyroNoise specifications

Information


Unique identifier OMICS_08901
Name PyroNoise
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Biological technology Roche
Operating system Unix/Linux
Parallelization MPI
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Chris Quince <>

Publication for PyroNoise

PyroNoise IN pipelines

 (2)
2015
PMCID: 4393233
PMID: 25860812
DOI: 10.1371/journal.pone.0122304

[…] was performed on a roche gs flx next generation sequencing platform (imgm laboratories)., reads with low quality and those shorter than 150 bp (basepairs) were removed from the dataset. the pyronoise algorithm was used to discard homopolymer-derived errors [47] and uchime to remove chimeric dna sequences caused by pcr errors [48]. otus (operational taxonomic units) were defined using […]

2014
PMCID: 3896389
PMID: 24465530
DOI: 10.1371/journal.pone.0085301

[…] operating procedure [37]. specially, sequences having a minimum flow length of 360 flows and a maximum flow length of 450 flows were de-noised using the mothur based re-implementation of the pyronoise algorithm [38] with the default parameters. de-noised sequences with more than two mismatches to the forward primer sequence, one mismatch to the barcode sequence, containing a homopolymer […]

PyroNoise institution(s)
Department of Civil Engineering, Rankine Building, University of Glasgow, Glasgow, UK

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