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PyroNoise

Clusters the flowgrams of 454 pyrosequencing reads using a distance measure that models sequencing noise. This infers the true sequences in a collection of amplicons. PyroNoise is not restricted to 16S rRNA sequence data: it can be applied whenever a homologous portion of a diverse gene is amplified and pyrosequenced, and could be used to determine eukaryotic microbial diversities or viral diversities in hosts or in population genetics.

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PyroNoise forum

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PyroNoise classification

PyroNoise specifications

Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Biological technology:
Roche
Parallelization:
MPI
Version:
2.0
Maintained:
Yes

PyroNoise distribution

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No versioning.

PyroNoise support

Maintainer

  • Chris Quince <>

Credits

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Publications

Institution(s)

Department of Civil Engineering, Rankine Building, University of Glasgow, Glasgow, UK

Link to literature

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