Pyrotools specifications
Information
| Unique identifier | OMICS_19881 |
|---|---|
| Name | Pyrotools |
| Software type | Toolkit/Suite |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | C, C++ |
| Computer skills | Advanced |
| Stability | Stable |
| Requirements | GCC49, Samtools, Bamtools, Seqtk, Bedtools, Vcftools, NGSUtils, SSW Library, Bowtie2 |
| Maintained | Yes |
Subtools
- GraphReAlign
- IndelCall
- ProbAlign
- SnpCall
- StrainBinning
- StrainCall
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Maintainers
- person_outline Rui Jiang <>
- person_outline Ting Chen <>
- person_outline Feng Zeng <>
Publications for Pyrotools
2014 BioRxiv
DOI: 10.1101/008698
library_books
PyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.
2013 Bioinformatics
PMID: 23995392
DOI: 10.1093/bioinformatics/btt512
2013 Nucleic Acids Res
PMID: 23700313
DOI: 10.1093/nar/gkt372
Pyrotools institution(s)
Xiamen University, Siming Qu, Xiamen Shi, China; Tsinghua University, Haidian Qu, Chine; University of Southern California, Los Angeles, CA, USA
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